Gene: Carub.0003s2972

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s2972
  • Transcript Identifier Carub.0003s2972.1
  • Gene Type Coding gene
  • Location scaffold_3 : 12525977-12528537 : negative

Gene Family Information

  • ID HOM05D006129
  • #Genes/#Species 129/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s2972.v1.1
  • pacid 39240370
  • synonym Carubv10012977m.g

Descriptions

  • Description PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT2G15820
GO:0045292
ISO
PLAZA Integrative OrthologymRNA cis splicing, via spliceosome Os02g0702000
GO:0048564
ISO
PLAZA Integrative Orthologyphotosystem I assembly AT2G15820
GO:0006388
ISO
PLAZA Integrative OrthologytRNA splicing, via endonucleolytic cleavage and ligation AT2G15820
GO:0010239
ISO
PLAZA Integrative Orthologychloroplast mRNA processing AT2G15820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004519
IEA
InterProendonuclease activity
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR027434 Homing endonuclease
IPR004860 Homing endonuclease, LAGLIDADG
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.4.1.4 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (OTP51)