Gene: PGSC0003DMG400026525

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400026525
  • Transcript Identifier PGSC0003DMT400068227
  • Gene Type Coding gene
  • Location ST4.03ch11 : 39742682-39746197 : positive

Gene Family Information

  • ID HOM05D006129
  • #Genes/#Species 129/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37464846
  • id PGSC0003DMG400026525.v4.03
  • uniprot M1CIN0

Descriptions

  • Description Pentatricopeptide repeat-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0045292
IBA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0048564
IBA
IEA
GOA Databasephotosystem I assembly
GO:0000373
IBA
IEA
GOA DatabaseGroup II intron splicing
GO:0010239
IEA
GOA Databasechloroplast mRNA processing
GO:0006388
IEA
GOA DatabasetRNA splicing, via endonucleolytic cleavage and ligation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004519
IEA
InterProendonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR027434 Homing endonuclease
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR004860 Homing endonuclease, LAGLIDADG
Mapman id Description
16.11.4.1.4 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (OTP51)