Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0087921 Rosa chinensis HOM05D002640 ORTHO05D003231 6.4e-114 414.1 206 100.0
RcHm_v2.0_Chr2g0087901 Rosa chinensis HOM05D002640 ORTHO05D003231 1.2e-67 260.4 207 67.1
FvH4_1g02810 Fragaria vesca HOM05D002640 ORTHO05D003231 3.1e-60 235.7 207 62.3
FAN28G2183 Fragaria x ananassa HOM05D002640 ORTHO05D003231 6.9e-60 234.6 207 62.3
FAN19G3161 Fragaria x ananassa HOM05D002640 ORTHO05D003231 4.5e-59 231.9 197 63.5
RcHm_v2.0_Chr3g0494601 Rosa chinensis HOM05D002640 ORTHO05D003231 3.3e-54 215.7 207 53.1
Prupe.7G019900 Prunus persica HOM05D002640 ORTHO05D003231 7.4e-54 214.5 211 50.2
FvH4_1g29220 Fragaria vesca HOM05D002640 ORTHO05D003231 8.2e-53 211.1 207 52.7
FAN19G2288 Fragaria x ananassa HOM05D002640 ORTHO05D003231 8.2e-53 211.1 207 52.7
FAN23G1939 Fragaria x ananassa HOM05D002640 ORTHO05D003231 8.2e-53 211.1 207 52.7
FAN26G3239 Fragaria x ananassa HOM05D002640 ORTHO05D003231 8.2e-53 211.1 207 52.7
MD00G1108000 Malus domestica HOM05D002640 ORTHO05D003231 8.2e-53 211.1 211 51.7
FAN28G1238 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.4e-52 210.3 207 52.2
MELO3C008653.2 Cucumis melo HOM05D002640 ORTHO05D003231 1.6e-51 206.8 213 49.3
MD00G1025500 Malus domestica HOM05D002640 ORTHO05D003231 2.0e-51 206.5 211 51.2
CsaV3_2G009910 Cucumis sativus L. HOM05D002640 ORTHO05D003231 3.5e-51 205.7 213 48.8
ClCG11G010450 Citrullus lanatus HOM05D002640 ORTHO05D003231 7.7e-51 204.5 213 49.3
CANSAT64G1505 Cannabis sativa HOM05D002640 ORTHO05D003231 2.9e-50 202.6 213 48.8
Psat0s699g0040 Pisum sativum HOM05D002640 ORTHO05D003231 2.9e-50 202.6 214 48.6
TPR.G26612 Trifolium pratense HOM05D002640 ORTHO05D003231 3.8e-50 202.2 214 48.6
arahy.Tifrunner.gnm1.ann1.FM1LAN Arachis hypogaea HOM05D002640 ORTHO05D003231 5.0e-50 201.8 213 48.8
arahy.Tifrunner.gnm1.ann1.PY7FNU Arachis hypogaea HOM05D002640 ORTHO05D003231 5.0e-50 201.8 213 48.8
Glyma.19G125600 Glycine max HOM05D002640 ORTHO05D003231 5.0e-50 201.8 214 49.1
CiPaw.09G052100 Carya illinoinensis HOM05D002640 ORTHO05D003231 6.5e-50 201.4 216 48.1
Glyma.03G121000 Glycine max HOM05D002640 ORTHO05D003231 6.5e-50 201.4 214 48.6
Haze_20287 Corylus avellana HOM05D002640 ORTHO05D003231 1.1e-49 200.7 216 48.6
VMungo1383G1765 Vigna mungo HOM05D002640 ORTHO05D003231 1.1e-49 200.7 214 48.1
Sed0027584 Sechium edule HOM05D002640 ORTHO05D003231 1.9e-49 199.9 213 47.9
Phvul.001G117200 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 2.5e-49 199.5 214 48.1
Ca_08696_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 5.5e-49 198.4 214 47.7
Dinv10811 Davidia involucrata HOM05D002640 ORTHO05D003231 5.5e-49 198.4 214 48.6
Medtr7g088700 Medicago truncatula HOM05D002640 ORTHO05D003231 7.2e-49 198.0 214 47.2
GSVIVG01025815001 Vitis vinifera HOM05D002640 ORTHO05D003231 1.6e-48 196.8 202 50.0
Eucgr.K01682 Eucalyptus grandis HOM05D002640 ORTHO05D003231 4.7e-48 195.3 214 49.1
QL07p013828 Quercus lobata HOM05D002640 ORTHO05D003231 8.0e-48 194.5 216 48.1
Lalb_Chr24g0400581 Lupinus albus HOM05D002640 ORTHO05D003231 1.8e-47 193.4 222 45.5
DCAR_020604 Daucus carota HOM05D002640 ORTHO05D003231 3.0e-47 192.6 216 46.8
Duzib106G1211 Durio zibethinus HOM05D002640 ORTHO05D003231 3.0e-47 192.6 213 47.9
Duzib114G0695 Durio zibethinus HOM05D002640 ORTHO05D003231 4.0e-47 192.2 212 47.6
CSS0028254 Camellia sinensis var. sinensis HOM05D002640 ORTHO05D003231 5.2e-47 191.8 214 46.7
Atru.chr1.1380 Acer truncatum HOM05D002640 ORTHO05D003231 6.7e-47 191.4 216 47.2
Dinv13151 Davidia involucrata HOM05D002640 ORTHO05D003231 6.7e-47 191.4 214 46.3
Manes.08G162401 Manihot esculenta HOM05D002640 ORTHO05D003231 6.7e-47 191.4 213 47.4
Thecc.10G133700 Theobroma cacao HOM05D002640 ORTHO05D003231 8.8e-47 191.0 213 47.9
DCAR_013529 Daucus carota HOM05D002640 ORTHO05D003231 1.2e-46 190.7 217 46.1
Lj1g0022797 Lotus japonicus HOM05D002640 ORTHO05D003231 2.6e-46 189.5 209 46.9
Gohir.D06G181500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 3.3e-46 189.1 213 47.4
Gorai.010G212900 Gossypium raimondii HOM05D002640 ORTHO05D003231 3.3e-46 189.1 213 47.4
QL07p013799 Quercus lobata HOM05D002640 ORTHO05D003231 3.3e-46 189.1 216 45.4
Ah.04g150530 Amaranthus hybridus HOM05D002640 ORTHO05D003231 4.4e-46 188.7 214 45.3
Lj2C412G3 Lonicera japonica HOM05D002640 ORTHO05D003231 5.7e-46 188.3 215 45.6
Gohir.A10G191700 Gossypium hirsutum HOM05D002640 ORTHO05D003231 7.5e-46 188.0 209 47.8
MD10G1173400 Malus domestica HOM05D002640 ORTHO05D003231 7.5e-46 188.0 205 51.7
Medtr7g087475 Medicago truncatula HOM05D002640 ORTHO05D003231 7.5e-46 188.0 214 44.4
Hund19066 Selenicereus undatus HOM05D002640 ORTHO05D003231 7.5e-46 188.0 214 44.4
EL10Ac3g07304 Beta vulgaris HOM05D002640 ORTHO05D003231 9.7e-46 187.6 215 45.6
Gohir.D10G199500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 1.3e-45 187.2 209 47.4
Gorai.011G223600 Gossypium raimondii HOM05D002640 ORTHO05D003231 1.3e-45 187.2 209 47.4
PGR142G0829 Punica granatum HOM05D002640 ORTHO05D003231 1.3e-45 187.2 214 46.7
Gohir.A06G172600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 2.2e-45 186.4 213 46.0
HanXRQChr06g0177131 Helianthus annuus HOM05D002640 ORTHO05D003231 2.8e-45 186.0 214 48.1
Actinidia38202 Actinidia chinensis HOM05D002640 ORTHO05D003231 4.8e-45 185.3 215 46.0
AUR62018416 Chenopodium quinoa HOM05D002640 ORTHO05D003231 6.3e-45 184.9 214 44.9
Cpa.g.sc1617.1 Carica papaya HOM05D002640 ORTHO05D003231 8.2e-45 184.5 213 44.6
Oeu044234.2 Olea europaea HOM05D002640 ORTHO05D003231 1.1e-44 184.1 215 43.3
COL.COLO4_10242 Corchorus olitorius HOM05D002640 ORTHO05D003231 1.4e-44 183.7 218 46.3
Prupe.8G211800 Prunus persica HOM05D002640 ORTHO05D003231 1.8e-44 183.3 214 48.1
Actinidia37853 Actinidia chinensis HOM05D002640 ORTHO05D003231 2.4e-44 183.0 211 43.6
Lsat_1_v5_gn_8_83860 Lactuca sativa HOM05D002640 ORTHO05D003231 2.4e-44 183.0 212 47.2
Peaxi162Scf00601g00007 Petunia axillaris HOM05D002640 ORTHO05D003231 2.4e-44 183.0 216 44.4
TWI77G0284 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 5.3e-44 181.8 215 46.5
FAN26G1225 Fragaria x ananassa HOM05D002640 ORTHO05D003231 7.0e-44 181.4 195 51.8
Ciclev10013566m.g Citrus clementina HOM05D002640 ORTHO05D003231 9.1e-44 181.0 214 45.3
Lalb_Chr14g0365421 Lupinus albus HOM05D002640 ORTHO05D003231 9.1e-44 181.0 222 43.7
THA.LOC104805690 Tarenaya hassleriana HOM05D002640 ORTHO05D003231 9.1e-44 181.0 214 43.9
Oeu022996.1 Olea europaea HOM05D002640 ORTHO05D003231 1.2e-43 180.6 215 43.7
AL2G22130 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 4.5e-43 178.7 214 43.9
AT1G65440 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 4.5e-43 178.7 214 43.9
Nitab4.5_0000062g0270 Nicotiana tabacum HOM05D002640 ORTHO05D003231 4.5e-43 178.7 215 43.7
Nitab4.5_0003225g0040 Nicotiana tabacum HOM05D002640 ORTHO05D003231 4.5e-43 178.7 215 44.2
Potri.006G031900 Populus trichocarpa HOM05D002640 ORTHO05D003231 4.5e-43 178.7 213 44.1
Potri.016G029200 Populus trichocarpa HOM05D002640 ORTHO05D003231 4.5e-43 178.7 213 44.1
Sabra06G0021300 Salix brachista HOM05D002640 ORTHO05D003231 4.5e-43 178.7 213 44.1
Sc19g0007910 Simmondsia chinensis HOM05D002640 ORTHO05D003231 4.5e-43 178.7 215 44.7
ECA236G4010 Erigeron canadensis HOM05D002640 ORTHO05D003231 7.7e-43 177.9 215 46.0
FAN28G1503 Fragaria x ananassa HOM05D002640 ORTHO05D003231 7.7e-43 177.9 195 50.8
HanXRQChr04g0125591 Helianthus annuus HOM05D002640 ORTHO05D003231 7.7e-43 177.9 209 47.8
C06p39050 Brassica napus HOM05D002640 ORTHO05D003231 1.3e-42 177.2 214 44.4
BolC6t38997H Brassica oleracea HOM05D002640 ORTHO05D003231 1.3e-42 177.2 214 44.4
FvH4_1g02481 Fragaria vesca HOM05D002640 ORTHO05D003231 1.3e-42 177.2 195 50.8
FAN19G1577 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.3e-42 177.2 195 50.8
Carub.0002s1117 Capsella rubella HOM05D002640 ORTHO05D003231 2.2e-42 176.4 214 43.5
Sopen10g031530 Solanum pennellii HOM05D002640 ORTHO05D003231 2.2e-42 176.4 215 42.8
Lsat_1_v5_gn_9_32200 Lactuca sativa HOM05D002640 ORTHO05D003231 3.8e-42 175.6 218 44.0
Sp5g20200 Schrenkiella parvula HOM05D002640 ORTHO05D003231 3.8e-42 175.6 214 43.9
Solyc10g081020.2 Solanum lycopersicum HOM05D002640 ORTHO05D003231 3.8e-42 175.6 215 42.8
A07p32820 Brassica napus HOM05D002640 ORTHO05D003231 5.0e-42 175.3 214 43.9
BraA07t30909Z Brassica rapa HOM05D002640 ORTHO05D003231 5.0e-42 175.3 214 43.9
CAN.G128.94 Capsicum annuum HOM05D002640 ORTHO05D003231 5.0e-42 175.3 212 42.9
Lj1C1081G2 Lonicera japonica HOM05D002640 ORTHO05D003231 6.5e-42 174.9 215 43.7
Sabra16G0033200 Salix brachista HOM05D002640 ORTHO05D003231 6.5e-42 174.9 213 43.2
Migut.J01553 Erythranthe guttata HOM05D002640 ORTHO05D003231 1.1e-41 174.1 215 42.8
unitig_21.g20682 Utricularia gibba HOM05D002640 ORTHO05D003231 1.1e-41 174.1 211 43.1
BolC2t07860H Brassica oleracea HOM05D002640 ORTHO05D003231 1.5e-41 173.7 214 43.0
PGSC0003DMG400028197 Solanum tuberosum HOM05D002640 ORTHO05D003231 1.5e-41 173.7 214 42.5
A02p13220 Brassica napus HOM05D002640 ORTHO05D003231 1.9e-41 173.3 214 43.0
BraA02t06378Z Brassica rapa HOM05D002640 ORTHO05D003231 1.9e-41 173.3 214 43.0
Thhalv10018001m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 1.9e-41 173.3 214 42.5
Rhsim04G0118000 Rhododendron simsii HOM05D002640 ORTHO05D003231 1.9e-41 173.3 217 41.9
TWI53G2001 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 1.9e-41 173.3 215 45.6
CARHR057100 Cardamine hirsuta HOM05D002640 ORTHO05D003231 3.2e-41 172.6 214 42.1
Cc06_g21410 Coffea canephora HOM05D002640 ORTHO05D003231 3.2e-41 172.6 212 45.3
MSTRG.6300 Avicennia marina HOM05D002640 ORTHO05D003231 5.5e-41 171.8 214 43.0
BcaC03g14705 Brassica carinata HOM05D002640 ORTHO05D003231 9.4e-41 171.0 214 43.0
C02p21400 Brassica napus HOM05D002640 ORTHO05D003231 9.4e-41 171.0 214 43.0
BolC2t08277H Brassica oleracea HOM05D002640 ORTHO05D003231 9.4e-41 171.0 214 43.0
HanXRQChr10g0298481 Helianthus annuus HOM05D002640 ORTHO05D003231 9.4e-41 171.0 217 42.9
AT1G63210 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 1.2e-40 170.6 212 42.9
BcaB05g24114 Brassica carinata HOM05D002640 ORTHO05D003231 2.7e-40 169.5 214 43.0
Carub.0002s0163 Capsella rubella HOM05D002640 ORTHO05D003231 8.0e-40 167.9 207 42.5
ECA247G4078 Erigeron canadensis HOM05D002640 ORTHO05D003231 8.0e-40 167.9 217 41.5
Nn7g37023 Nelumbo nucifera HOM05D002640 ORTHO05D003231 8.0e-40 167.9 212 42.9
PSO339G4261 Papaver somniferum HOM05D002640 ORTHO05D003231 1.0e-39 167.5 212 42.0
PSO384G3455 Papaver somniferum HOM05D002640 ORTHO05D003231 1.8e-39 166.8 212 42.0
SalBow6G2030 Salvia bowleyana HOM05D002640 ORTHO05D003231 2.3e-39 166.4 212 41.0
TAR623G0852 Trochodendron aralioides HOM05D002640 ORTHO05D003231 5.2e-39 165.2 223 41.3
AL2G12170 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 3.4e-38 162.5 212 40.6
CDE08G1380 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 5.7e-38 161.8 215 43.7
SGA_v2.0_scaffold66G22308 Striga asiatica HOM05D002640 ORTHO05D003231 9.8e-38 161.0 216 40.3
Migut.J01544 Erythranthe guttata HOM05D002640 ORTHO05D003231 1.1e-36 157.5 212 39.6
GSVIVG01012381001 Vitis vinifera HOM05D002640 ORTHO05D003231 4.1e-36 155.6 212 42.5
GSVIVG01012377001 Vitis vinifera HOM05D002640 ORTHO05D003231 5.4e-36 155.2 212 42.5
AUR62041298 Chenopodium quinoa HOM05D002640 ORTHO05D003231 2.7e-35 152.9 204 39.7
SEGI_15393 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 1.3e-34 150.6 217 40.1
SEGI_20723 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 1.7e-34 150.2 221 40.7
vmacro08975 Vaccinium macrocarpon HOM05D002640 ORTHO05D003231 1.7e-34 150.2 203 40.4
Carub.0001s4195 Capsella rubella HOM05D002640 ORTHO05D003231 8.6e-34 147.9 198 43.4
SEGI_00617 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.5e-33 146.4 217 40.6
FAN23G2835 Fragaria x ananassa HOM05D002640 ORTHO05D003231 3.3e-33 146.0 181 48.6
Sp2g01330 Schrenkiella parvula HOM05D002640 ORTHO05D003231 4.2e-33 145.6 212 38.7
C02p17450 Brassica napus HOM05D002640 ORTHO05D003231 5.5e-33 145.2 178 43.3
Aqoxy1G00051 Aquilegia oxysepala HOM05D002640 ORTHO05D003231 1.6e-32 143.7 216 38.9
QL04p022161 Quercus lobata HOM05D002640 ORTHO05D003231 2.1e-32 143.3 203 39.9
MBI11_g01739_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 2.8e-32 142.9 215 39.1
CDE09G1137 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 3.6e-32 142.5 213 41.3
Lj9C650G10 Lonicera japonica HOM05D002640 ORTHO05D003231 4.7e-32 142.1 206 40.3
MBI13_g02373_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 8.0e-32 141.4 215 39.1
Zm00001eb291590 Zea mays HOM05D002640 ORTHO05D003231 8.0e-32 141.4 217 37.8
Dinv13155 Davidia involucrata HOM05D002640 ORTHO05D003231 1.0e-31 141.0 167 43.1
ATR0782G064 Amborella trichopoda HOM05D002640 ORTHO05D003231 1.4e-31 140.6 204 42.6
Mapoly0025s0106 Marchantia polymorpha HOM05D002640 ORTHO05D003231 1.4e-31 140.6 219 36.5
Aa31LG2G2460 Aethionema arabicum HOM05D002640 ORTHO05D003231 2.3e-31 139.8 214 38.3
MBI19_g47879_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 1.2e-30 137.5 178 42.7
HPP92_011291 Vanilla planifolia HOM05D002640 ORTHO05D003231 3.4e-30 136.0 211 40.3
Pp3c5_23930 Physcomitrium patens HOM05D002640 ORTHO05D003231 4.4e-30 135.6 215 35.8
SMO364G0195 Selaginella moellendorffii HOM05D002640 ORTHO05D003231 3.7e-29 132.5 214 35.5
Ca_12390_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 1.8e-28 130.2 210 39.5
Potri.001G034300 Populus trichocarpa HOM05D002640 ORTHO05D003231 3.1e-28 129.4 201 37.3
Lj3g0013532 Lotus japonicus HOM05D002640 ORTHO05D003231 9.2e-28 127.9 213 37.1
QL04p022175 Quercus lobata HOM05D002640 ORTHO05D003231 1.2e-27 127.5 212 37.3
BcaNung05532 Brassica carinata HOM05D002640 ORTHO05D003231 4.5e-27 125.6 214 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4939 Anthoceros agrestis HOM05D002640 ORTHO05D003231 1.0e-26 124.4 222 32.4
CBR_g879 Chara braunii HOM05D002640 ORTHO05D003231 1.0e-26 124.4 220 34.5
SEGI_17703 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 6.6e-26 121.7 177 40.7
TPR.G30407 Trifolium pratense HOM05D002640 ORTHO05D003231 1.1e-25 120.9 210 36.2
Psat5g224720 Pisum sativum HOM05D002640 ORTHO05D003231 1.9e-25 120.2 210 36.2
Phvul.005G013600 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 9.5e-25 117.9 213 35.2
CBR_g876 Chara braunii HOM05D002640 ORTHO05D003231 2.8e-24 116.3 215 30.2
VMungo1080G1740 Vigna mungo HOM05D002640 ORTHO05D003231 3.6e-24 115.9 213 35.2
Glyma.06G312200 Glycine max HOM05D002640 ORTHO05D003231 4.7e-24 115.5 212 36.3
Lalb_Chr15g0079261 Lupinus albus HOM05D002640 ORTHO05D003231 1.8e-23 113.6 212 34.9
Pp3c5_24480 Physcomitrium patens HOM05D002640 ORTHO05D003231 9.8e-22 107.8 219 32.0
RcHm_v2.0_Chr2g0087481 Rosa chinensis HOM05D002640 ORTHO05D003231 1.7e-21 107.1 168 44.0
Gohir.A05G396600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 2.4e-20 103.2 204 32.8
COL.COLO4_04288 Corchorus olitorius HOM05D002640 ORTHO05D003231 3.2e-20 102.8 175 34.9
SHI11341 Sapria himalayana HOM05D002640 ORTHO05D003231 9.2e-20 101.3 208 31.2
Psat3g019400 Pisum sativum HOM05D002640 ORTHO05D003231 1.0e-18 97.8 152 36.8
Thhalv10012314m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 1.1e-15 87.8 225 30.2
HPP92_011270 Vanilla planifolia HOM05D002640 ORTHO05D003231 8.9e-15 84.7 108 41.7
FAN23G0365 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.2e-13 80.1 74 56.8
FAN23G1026 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.2e-13 80.1 74 56.8
COL.COLO4_25705 Corchorus olitorius HOM05D002640 ORTHO05D003231 3.2e-12 76.3 74 48.6
Cfa022608 Carpinus fangiana HOM05D002640 ORTHO05D003231 3.0e-10 69.7 189 28.6
SEGI_22762 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.8e-08 63.2 82 34.1
Manes.04G154475 Manihot esculenta HOM05D002640 ORTHO05D003231 7.5e-06 55.1 69 39.1


User provided reference genes

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