Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 0.0e+00 2422.1 1214 100.0
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 0.0e+00 1525.4 1262 62.6
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 0.0e+00 1314.3 1253 56.7
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 0.0e+00 1297.0 1262 55.9
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 0.0e+00 1292.3 1255 55.6
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 0.0e+00 1286.2 1250 55.0
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 0.0e+00 1279.2 1244 55.2
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 0.0e+00 1270.8 1230 55.9
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 0.0e+00 1256.9 1230 56.0
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 0.0e+00 1234.2 1193 56.3
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 0.0e+00 1233.0 1257 54.6
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 0.0e+00 1228.4 1240 53.6
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 0.0e+00 1226.5 1240 53.5
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 0.0e+00 1218.4 1245 53.3
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 0.0e+00 1216.4 1247 52.1
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 0.0e+00 1214.1 1208 54.6
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 0.0e+00 1208.4 1256 52.9
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 0.0e+00 1201.8 1235 53.3
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 0.0e+00 1201.8 1235 53.3
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 0.0e+00 1201.4 1215 54.3
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 0.0e+00 1201.4 1205 54.4
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 0.0e+00 1201.4 1238 52.0
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 0.0e+00 1196.8 1252 52.7
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 0.0e+00 1196.4 1258 51.7
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 0.0e+00 1194.9 1246 52.4
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 0.0e+00 1194.9 1242 51.0
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 0.0e+00 1193.3 1257 52.3
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 0.0e+00 1192.2 1239 51.6
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 0.0e+00 1191.4 1238 51.5
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 0.0e+00 1188.7 1239 53.1
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 0.0e+00 1187.2 1263 51.4
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 0.0e+00 1182.5 1246 51.9
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 0.0e+00 1182.2 1244 53.3
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 0.0e+00 1181.8 1257 50.9
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 0.0e+00 1176.0 1237 52.0
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 0.0e+00 1175.6 1252 51.1
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 0.0e+00 1167.1 1270 51.3
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 0.0e+00 1166.8 1267 51.3
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 0.0e+00 1164.8 1229 52.0
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 0.0e+00 1164.4 1239 51.0
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 0.0e+00 1163.3 1238 51.4
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 0.0e+00 1163.3 1243 51.4
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 0.0e+00 1161.4 1239 51.4
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 0.0e+00 1161.0 1232 53.0
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 0.0e+00 1159.8 1200 53.1
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 0.0e+00 1158.7 1280 49.8
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 0.0e+00 1156.4 1268 51.1
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 0.0e+00 1156.0 1289 49.3
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 0.0e+00 1154.0 1245 51.6
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 0.0e+00 1150.6 1098 56.2
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 0.0e+00 1140.9 1339 48.6
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 0.0e+00 1137.5 1263 50.0
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 0.0e+00 1137.1 1250 50.5
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 0.0e+00 1136.3 1243 50.7
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 0.0e+00 1134.8 985 59.8
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 0.0e+00 1132.5 1294 49.4
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 0.0e+00 1125.9 1220 50.9
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 0.0e+00 1125.5 1248 50.4
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 0.0e+00 1125.2 1343 49.5
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 0.0e+00 1115.9 1220 50.5
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 0.0e+00 1114.4 1236 50.5
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 0.0e+00 1111.3 1217 50.3
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 0.0e+00 1111.3 1233 49.5
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 0.0e+00 1108.2 1251 49.6
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 0.0e+00 1105.9 1236 49.3
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 0.0e+00 1102.4 1273 48.5
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 0.0e+00 1092.0 1249 49.2
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 0.0e+00 1088.9 1235 49.7
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 0.0e+00 1085.9 1242 49.6
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 0.0e+00 1084.3 1245 49.3
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 1.7e-311 1073.2 1242 48.9
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 1.0e-307 1060.4 1215 49.1
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 2.1e-297 1026.2 948 56.4
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 1.8e-293 1013.1 893 58.3
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.2e-290 1001.9 1241 46.5
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 5.2e-288 995.0 1247 45.1
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 3.1e-285 985.7 825 61.3
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 2.0e-284 983.0 789 63.4
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 3.8e-283 978.8 918 55.8
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 1.5e-282 976.9 1239 45.3
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 2.0e-263 913.3 847 55.0
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 8.1e-249 864.8 1168 43.4
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 1.1e-240 837.8 810 52.1
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 4.4e-239 832.4 899 51.2
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 3.5e-236 822.8 1349 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.3e-235 820.1 1019 44.6
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 7.3e-234 815.1 1273 40.0
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 1.3e-230 804.3 641 62.2
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 8.1e-225 785.0 811 52.9
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 1.4e-224 784.3 863 47.2
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 7.1e-213 745.3 621 60.5
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 4.4e-194 682.9 1010 41.1
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.6e-188 664.5 503 65.6
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.6e-183 647.9 798 47.9
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 2.7e-175 620.5 501 61.3
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 1.0e-158 565.5 961 36.5
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 3.3e-149 533.9 449 61.2
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.9e-136 491.5 648 44.4
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 1.9e-120 438.3 1076 30.7
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 4.8e-116 423.7 266 75.9
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 6.0e-111 406.8 420 50.0
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 1.8e-110 405.2 412 54.6
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 1.4e-107 395.6 451 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 9.0e-107 392.9 791 33.2
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.3e-102 378.3 792 31.9
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.3e-102 378.3 792 31.9
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 6.9e-99 366.7 768 32.0
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 1.2e-95 355.9 272 67.3
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 1.4e-88 332.4 728 31.3
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 3.9e-86 324.3 257 63.4
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 2.6e-82 311.6 841 29.5
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 7.9e-79 300.1 788 29.2
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 8.8e-78 296.6 203 70.9
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.4e-62 246.1 361 43.2
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.5e-56 224.2 163 65.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.1e-48 199.9 490 30.2
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 2.7e-42 178.7 103 76.7
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 4.7e-39 167.9 480 29.0
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 1.7e-33 149.4 238 44.1
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 1.5e-32 146.4 613 23.3
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 1.5e-32 146.4 155 52.3
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 6.2e-31 141.0 97 70.1
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 4.9e-28 131.3 105 59.0
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 1.6e-26 126.3 81 74.1
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 4.6e-26 124.8 97 66.0
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 4.6e-26 124.8 128 51.6
Psat0s3496g0160 Pisum sativum HOM05D001876 ORTHO05D002002 1.2e-23 116.7 98 59.2
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 5.2e-22 111.3 235 33.6
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 1.7e-20 106.3 248 30.6
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 4.9e-20 104.8 265 29.1
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 1.6e-15 89.7 59 72.9
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 1.1e-14 87.0 323 28.2
Sed0011036 Sechium edule HOM05D000246 ORTHO05D002923 1.2e-13 83.6 378 23.8
PSO724G0110 Papaver somniferum HOM05D000246 ORTHO05D002923 2.6e-13 82.4 368 25.0
Carub.0007s0451 Capsella rubella HOM05D000246 ORTHO05D002923 9.9e-13 80.5 393 23.2
PSO135G0853 Papaver somniferum HOM05D000246 ORTHO05D002923 9.9e-13 80.5 369 22.2
AT4G35740 Arabidopsis thaliana HOM05D000246 ORTHO05D002923 4.9e-12 78.2 379 23.2
HanXRQChr04g0125951 Helianthus annuus HOM05D000246 ORTHO05D002923 4.9e-12 78.2 392 24.7
Ca_02198_v3 Cicer arietinum L. HOM05D000246 ORTHO05D002923 6.4e-12 77.8 371 23.7
Migut.K00583 Erythranthe guttata HOM05D000246 ORTHO05D002923 6.4e-12 77.8 370 23.8
Thhalv10024545m.g Eutrema salsugineum HOM05D000246 ORTHO05D002923 8.4e-12 77.4 387 23.3
Sp7g33500 Schrenkiella parvula HOM05D000246 ORTHO05D002923 1.1e-11 77.0 397 22.9
Sopen07g021600 Solanum pennellii HOM05D000246 ORTHO05D002923 1.4e-11 76.6 384 24.0
Solyc07g042010.4 Solanum lycopersicum HOM05D000246 ORTHO05D002923 1.9e-11 76.3 384 24.0
Lalb_Chr11g0074201 Lupinus albus HOM05D000246 ORTHO05D002923 2.4e-11 75.9 376 22.6
Zm00001eb257010 Zea mays HOM05D000246 ORTHO05D002923 2.4e-11 75.9 430 23.0
Cre03.g178950 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D002923 4.2e-11 75.1 372 25.0
Mapoly0066s0087 Marchantia polymorpha HOM05D000246 ORTHO05D007958 4.2e-11 75.1 386 24.4
AL7G15360 Arabidopsis lyrata HOM05D000246 ORTHO05D002923 7.1e-11 74.3 383 23.2
Nitab4.5_0000343g0300 Nicotiana tabacum HOM05D000246 ORTHO05D002923 7.1e-11 74.3 431 22.3
THA.LOC104819729 Tarenaya hassleriana HOM05D000246 ORTHO05D002923 7.1e-11 74.3 359 22.8
CARHR244080 Cardamine hirsuta HOM05D000246 ORTHO05D002923 1.6e-10 73.2 391 22.5
DCAR_001877 Daucus carota HOM05D000032 ORTHO05D004701 2.7e-10 72.4 467 21.6
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 3.5e-10 72.0 66 51.5
Gorai.002G190800 Gossypium raimondii HOM05D000246 ORTHO05D008363 6.0e-10 71.2 386 24.9
Lsat_1_v5_gn_2_72741 Lactuca sativa HOM05D005460 ORTHO05D000550 7.8e-10 70.9 205 28.3
CBR_g12756 Chara braunii HOM05D000246 ORTHO05D002923 1.3e-09 70.1 395 24.3
PGR044G0725 Punica granatum HOM05D000246 ORTHO05D002923 1.7e-09 69.7 408 22.3
Atru.chr10.2369 Acer truncatum HOM05D000246 ORTHO05D009140 2.3e-09 69.3 355 23.7
ATR0706G115 Amborella trichopoda HOM05D000246 ORTHO05D002923 3.9e-09 68.6 366 25.1
Lsat_1_v5_gn_2_72781 Lactuca sativa HOM05D005460 ORTHO05D000550 3.9e-09 68.6 208 30.3
Medtr0353s0020 Medicago truncatula HOM05D067717 ORTHO05D044775 3.9e-09 68.6 396 23.0
ClCG11G001380 Citrullus lanatus HOM05D000246 ORTHO05D002923 5.1e-09 68.2 418 21.3
PRCOL_00002614 Prasinoderma coloniale HOM05D000246 ORTHO05D008363 8.7e-09 67.4 371 24.3
MCO09G327 Micromonas commoda HOM05D000246 ORTHO05D009140 1.1e-08 67.0 372 21.8
Potri.012G063000 Populus trichocarpa HOM05D005460 ORTHO05D018279 1.1e-08 67.0 75 41.3
Lsat_1_v5_gn_8_85621 Lactuca sativa HOM05D000246 ORTHO05D002923 1.9e-08 66.2 399 22.3
VMungo0251G2810 Vigna mungo HOM05D000246 ORTHO05D008363 1.9e-08 66.2 386 24.6
CANSAT54G0602 Cannabis sativa HOM05D000246 ORTHO05D009140 5.6e-08 64.7 374 22.7
Cc11_g16610 Coffea canephora HOM05D000246 ORTHO05D008363 1.3e-07 63.5 455 23.3
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 1.6e-07 63.2 369 24.7
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 2.1e-07 62.8 386 23.6
Pp3c22_7840 Physcomitrium patens HOM05D000032 ORTHO05D004353 2.8e-07 62.4 208 24.0
Actinidia10444 Actinidia chinensis HOM05D005460 ORTHO05D056868 3.6e-07 62.0 85 41.2
PRCOL_00005634 Prasinoderma coloniale HOM05D000246 ORTHO05D009140 3.6e-07 62.0 377 22.5
Manes.18G122300 Manihot esculenta HOM05D000246 ORTHO05D009140 1.4e-06 60.1 363 23.4
Mapoly0130s0046 Marchantia polymorpha HOM05D000246 ORTHO05D009140 3.1e-06 58.9 365 23.8
Oeu041679.1 Olea europaea HOM05D000246 ORTHO05D008363 3.1e-06 58.9 483 22.8
RcHm_v2.0_Chr6g0305641 Rosa chinensis HOM05D003889 ORTHO05D004407 4.0e-06 58.5 378 23.3
C03p80860 Brassica napus HOM05D000246 ORTHO05D002923 5.3e-06 58.2 386 21.8
Sp7g30460 Schrenkiella parvula HOM05D003889 ORTHO05D004407 5.3e-06 58.2 510 20.6
HanXRQChr01g0013541 Helianthus annuus HOM05D000246 ORTHO05D009140 6.9e-06 57.8 378 22.8


User provided reference genes

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