Gene: Lj1g0006842
General Information
Structural Information
- Species Lotus japonicus
- Gene Identifier Lj1g0006842
- Transcript Identifier Lj1g0006842.1
- Gene Type Coding gene
- Location chr1 : 92472184-92498654 : positive
Gene Family Information
- ID HOM05D005460
- #Genes/#Species 140/93
- Phylogenetic origin
- ID ORTHO05D008059
- #Genes/#Species 124/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lj1g0006842.Lj1.0v1
- pacid 44913975
Descriptions
- Description PTHR24031:SF267 - UBQ, HELICASE-C AND DEAD-LIKE HELICASE DOMAIN-CONTAINING PROTEIN
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g114780.3 |
| GO:0036297 | ISO | PLAZA Integrative Orthology | interstrand cross-link repair | AT5G08110 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc03g114780.3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR000626 | Ubiquitin-like domain |
| IPR029071 | Ubiquitin-like domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR018973 | DEAD/DEAH-box helicase, putative |
| Mapman id | Description |
|---|---|
| 13.3.5.5.2.2.3 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.crosslink repair helicase (HRQ1) |