Gene: Sopen07g021600

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g021600
  • Transcript Identifier Sopen07g021600.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 65347598-65362123 : negative

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g021600.1

Descriptions

  • Description Encodes RECQ3, an ATP-dependent helicase. | RecQl3 | FUNCTIONS IN: ATP binding, ATP-dependent helicase activity | INVOLVED IN: DNA recombination | LOCATED IN: cellular_component unknown | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DNA helicase, ATP-dependent, RecQ type , DNA helicase, ATP-dependent, RecQ type, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: RECQ helicase L2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006310
IEA
InterProDNA recombination
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc07g042010.4
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT4G35740

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0036310
ISO
PLAZA Integrative Orthologyannealing activity AT4G35740
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc07g042010.4
GO:0009378
ISO
PLAZA Integrative Orthologyfour-way junction helicase activity AT4G35740
GO:0043138
ISO
PLAZA Integrative Orthology3'-5' DNA helicase activity AT4G35740

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
35.1 not assigned.annotated