Gene: Sopen03g033860

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g033860
  • Transcript Identifier Sopen03g033860.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 69029823-69043940 : positive

Gene Family Information

  • ID HOM05D005460
  • #Genes/#Species 140/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g033860.1

Descriptions

  • Description nucleic acid binding, ATP-dependent helicases, ATP binding, helicases, ATP-dependent helicases | FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , Ubiquitin supergroup , Protein of unknown function DUF1998 , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g114780.3
GO:0036297
ISO
PLAZA Integrative Orthologyinterstrand cross-link repair AT5G08110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc03g114780.3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR018973 DEAD/DEAH-box helicase, putative
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
13.3.5.5.2.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.crosslink repair helicase (HRQ1)