Gene: AT4G35740

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G35740
  • Transcript Identifier AT4G35740.1
  • Gene Type Coding gene
  • Location Chr4 : 16936233-16940172 : positive

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G35740.1
  • symbol RecQl3
  • uniprot Q9FT72

Descriptions

  • Description DEAD/DEAH box RNA helicase family protein
  • Computational description RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 32322 Blast hits to 32243 proteins in 2865 species: Archae - 544; Bacteria - 19123; Metazoa - 3830; Fungi - 3081; Plants - 1743; Viruses - 10; Other Eukaryotes - 3991 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc07g042010.4
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0006310
IDA
IBA
Gene OntologyDNA recombination1 2
GO:0006310
IEA
InterProDNA recombination
GO:0032508
IDA
IBA
Gene OntologyDNA duplex unwinding1 2
GO:0006268
IBA
Gene OntologyDNA unwinding involved in DNA replication2
GO:0000724
IBA
Gene Ontologydouble-strand break repair via homologous recombination2
GO:0006281
IBA
Gene OntologyDNA repair2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc07g042010.4
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IDA
Gene Ontologyhelicase activity1
GO:0004386
IEA
InterProhelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0009378
IDA
IBA
Gene Ontologyfour-way junction helicase activity1 2
GO:0043138
IDA
IBA
Gene Ontology3'-5' DNA helicase activity1 2
GO:0036310
IDA
Gene Ontologyannealing activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0005737
IBA
Gene Ontologycytoplasm2
GO:0005694
IBA
Gene Ontologychromosome2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated