Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1702.6 877 100.0
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1700.3 877 99.9
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1231.1 805 78.5
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1171.8 818 75.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1162.1 804 72.1
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 0.0e+00 1141.7 848 71.1
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 0.0e+00 1139.0 777 74.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1137.1 838 69.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1130.2 809 72.7
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1126.7 822 69.3
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1124.0 805 71.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1119.4 823 69.0
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1116.7 840 69.2
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1114.8 841 68.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1101.7 833 68.2
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 0.0e+00 1091.3 811 68.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1090.9 788 70.1
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1083.6 800 69.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1076.2 834 66.9
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 5.4e-311 1070.8 852 66.0
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.6e-310 1068.5 731 72.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.4e-306 1056.2 796 66.6
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.1e-303 1046.6 780 68.3
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.4e-303 1045.4 797 65.4
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.2e-302 1043.1 801 67.0
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.0e-302 1042.3 774 67.7
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 3.5e-302 1041.6 838 63.0
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 7.8e-302 1040.4 844 64.1
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-301 1039.3 737 72.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.9e-301 1038.5 793 67.0
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.5e-300 1036.2 799 66.6
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.9e-300 1035.8 801 66.5
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.3e-300 1034.6 837 65.5
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-298 1029.2 659 74.1
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.2e-296 1022.3 799 64.2
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.0e-295 1017.3 777 66.0
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.7e-293 1012.7 784 64.5
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.9e-293 1011.5 757 66.3
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 2.5e-292 1008.8 774 66.3
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.3e-292 1008.4 777 65.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 8.0e-291 1003.8 730 68.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.0e-290 1001.5 773 65.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.2e-290 1001.1 757 65.7
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 4.4e-289 998.0 700 68.7
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 2.2e-288 995.7 797 63.7
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.1e-284 983.4 803 63.3
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.5e-284 983.0 803 64.1
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.3e-284 981.5 829 61.8
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 8.1e-283 977.2 705 67.9
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.8e-282 976.1 806 62.3
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 4.4e-281 971.5 821 61.5
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 5.8e-281 971.1 706 67.1
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.9e-280 968.8 782 63.4
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.1e-279 966.8 769 63.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 3.2e-279 965.3 759 62.3
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.6e-278 963.0 704 67.8
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.7e-277 959.5 782 61.9
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.3e-276 955.3 796 61.7
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 7.3e-276 954.1 738 63.7
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.2e-275 953.4 688 66.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.4e-274 949.9 801 61.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 6.8e-274 947.6 686 66.2
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.0e-273 946.0 688 66.6
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 1.3e-272 943.3 830 59.0
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.9e-272 942.2 814 59.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 4.6e-270 934.9 789 62.0
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.9e-269 931.8 845 57.4
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.1e-268 930.2 753 61.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.3e-268 928.7 780 60.1
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 6.2e-267 924.5 753 61.6
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 8.1e-267 924.1 766 59.9
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.4e-266 923.3 804 58.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 4.0e-266 921.8 847 56.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.2e-262 910.2 766 59.1
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 4.6e-262 908.3 707 63.9
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 6.0e-262 907.9 761 59.0
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 6.0e-262 907.9 761 59.0
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 6.0e-262 907.9 761 59.0
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.1e-260 903.7 655 67.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 6.2e-259 897.9 716 61.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 3.1e-258 895.6 767 58.9
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 6.9e-258 894.4 662 67.2
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.0e-253 880.6 746 58.0
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 2.1e-246 856.3 810 55.6
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.1e-246 856.3 748 57.2
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-246 855.5 693 60.5
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.8e-245 853.2 742 57.1
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.5e-244 849.4 619 68.0
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.5e-239 831.6 565 72.9
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 4.6e-238 828.6 799 54.4
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-236 823.2 546 74.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.4e-234 817.0 748 53.9
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.1e-234 815.5 737 55.6
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.0e-234 814.3 667 59.8
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.7e-228 795.0 803 51.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-221 773.5 608 62.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.8e-218 763.5 808 53.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.6e-192 675.2 564 63.8
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.3e-189 666.8 717 47.6
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.5e-188 664.1 651 53.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.1e-175 621.3 702 48.3
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.5e-159 567.8 467 62.3
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.0e-157 559.7 414 65.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.5e-135 488.0 760 42.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-133 481.1 538 50.7
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 7.7e-116 422.5 304 70.1
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.2e-108 398.7 410 57.1
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 5.9e-108 396.4 490 48.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.8e-94 350.1 663 31.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-90 338.6 311 57.2
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-86 325.5 387 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.8e-80 303.1 646 29.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 5.2e-72 276.9 786 26.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.8e-64 251.9 670 26.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.7e-60 238.0 229 56.8
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.8e-57 228.0 699 25.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.1e-45 189.5 171 55.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.6e-43 180.3 129 65.1
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 6.2e-41 173.7 691 23.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 7.6e-31 140.2 215 43.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-30 139.4 198 44.9
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 6.9e-16 90.5 180 35.6
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.2e-15 89.7 729 18.2
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.6e-15 88.6 61 65.6
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-13 81.6 51 72.5
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 2.1e-12 79.0 53 73.6
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.1e-10 73.2 55 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-08 64.3 429 19.6
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.5e-07 62.8 387 20.7
RcHm_v2.0_Chr3g0448241 Rosa chinensis HOM05D000001 ORTHO05D000003 2.0e-07 62.4 389 21.1
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-07 61.6 363 22.0
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 3.4e-07 61.6 206 29.1
PGR031G1955 Punica granatum HOM05D000001 ORTHO05D000003 4.5e-07 61.2 266 24.4
AagrBONN_evm.TU.Sc2ySwM_228.880 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-07 60.5 335 22.1
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 7.6e-07 60.5 421 19.2
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 346 21.4
AagrBONN_evm.TU.Sc2ySwM_368.3189 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 455 21.8
AagrBONN_evm.TU.Sc2ySwM_369.322 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 247 25.9
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.3e-06 59.7 103 30.1
AagrBONN_evm.TU.Sc2ySwM_368.2006__2007 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.9 335 22.7
Duzib177G0483 Durio zibethinus HOM05D000001 ORTHO05D000003 2.9e-06 58.5 170 28.8
PGR119G0130 Punica granatum HOM05D000001 ORTHO05D000003 3.8e-06 58.2 229 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2311__2312 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-06 57.8 354 22.3
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-06 57.4 327 22.9
AagrBONN_evm.TU.Sc2ySwM_368.2160 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-06 57.4 381 23.4
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 8.5e-06 57.0 169 25.4
AagrBONN_evm.TU.Sc2ySwM_228.4318 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.5e-06 57.0 321 24.6


User provided reference genes

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