Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0048591 PREDICTED: pentatricopeptide repeat-containing protein At2g15820 [Vitis vinifera] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.BG.82.p chr5 - View
Actinidia chinensis Actinidia12976 Lachesis_group2 - View
Arabidopsis lyrata AL3G47590 scaffold_3 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SUMB0F arahy.Tifrunner.gnm1.Arahy.10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.769PPM PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT2G15820 endonuclease Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts%2C a factor required for the assembly of Photosystem I. Therefore%2C homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL%2C trnG%2C trnI%2C and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases%2C it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. ORGANELLE TRANSCRIPT PROCESSING 51 (OTP51)%3B FUNCTIONS IN: endonuclease activity%3B INVOLVED IN: photosystem I assembly%2C nuclear mRNA cis splicing%2C via spliceosome%2C Group II intron splicing%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C LAGLIDADG DNA endonuclease (InterPro:IPR004860)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G61990.1)%3B Has 8373 Blast hits to 4744 proteins in 190 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 37%3B Fungi - 65%3B Plants - 8172%3B Viruses - 0%3B Other Eukaryotes - 95 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaC06g36090 ChrC06 - View
Brassica napus C07p07940 C07 + View
Brassica napus A07p04960 A07 + View
Brassica rapa BraA07t28289Z A07 + View
Beta vulgaris EL10Ac9g21818 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Chr9_EL10_PGA_scaffold8 + View
Cannabis sativa CANSAT25G2181 NC_044370.1 + View
Corylus avellana Haze_01881 Similar to OTP51: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc02_g18430 Putative uncharacterized protein chr2 + View
Citrus clementina Ciclev10027854m.g scaffold_8 - View
Carpinus fangiana Cfa005424 Cfa02 + View
Cardamine hirsuta CARHR106180 Pentatricopeptide repeat-containing protein, putative Chr3 - View
Carya illinoinensis CiPaw.05G055300 PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Chr05 - View
Carica papaya Cpa.g.sc62.53 supercontig_62 - View
Chenopodium quinoa AUR62016636 OTP51: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic C_Quinoa_Scaffold_3670 - View
Chenopodium quinoa AUR62011424 OTP51: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic C_Quinoa_Scaffold_3333 + View
Capsella rubella Carub.0003s2972 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) scaffold_3 - View
Daucus carota DCAR_003623 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv42121 GWHABJS00000002 - View
Davidia involucrata Dinv23594 GWHABJS00000005 - View
Durio zibethinus Duzib248G0151 NW_019168048.1 - View
Erigeron canadensis ECA234G4125 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.G01504 Chr07 - View
Erythranthe guttata Migut.B00306 scaffold_2 + View
Fragaria x ananassa FAN15G2181 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Fvb2-4 - View
Fragaria x ananassa FAN24G2628 PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Fvb2-2 + View
Fragaria x ananassa FAN27G0179 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Fvb2-1 - View
Fragaria x ananassa FAN20G2787 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Fvb2-3 + View
Fragaria vesca FvH4_2g06900 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Fvb2 - View
Gossypium hirsutum Gohir.A01G005900 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) A01 + View
Lonicera japonica Lj5P206T15 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_5_113460 PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Lsat_1_v8_lg_5 + View
Malus domestica MD10G1089000 endonucleases Chr10 + View
Manihot esculenta Manes.17G094600 Chromosome17 + View
Punica granatum PGR042G1055 NC_045130.1 + View
Prunus persica Prupe.8G116000 PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Pp08 + View
Populus trichocarpa Potri.009G106800 PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Chr09 - View
Quercus lobata QL11p038411 11 - View
Rosa chinensis RcHm_v2.0_Chr6g0259211 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim11G0169300 chr11 - View
Salix brachista Sabra09G0081600 GWHAAZH00000009 - View
Simmondsia chinensis Sc08g0000140 GWHAASQ00000008 - View
Selenicereus undatus Hund00318 Scaffold_33678 + View
Theobroma cacao Thecc.02G095400 Pentatricopeptide repeat-containing protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104807348 pentatricopeptide repeat-containing protein At2g15820%2C chloroplastic NW_010963495.1 + View
Tripterygium wilfordii TWI79G0519 NC_052238.1 + View
Tripterygium wilfordii TWI31G0609 NC_052233.1 - View
Vaccinium macrocarpon vmacro02172 Similar to OTP51: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View