Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003913 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D023319 9.9e-64 246.5 115 100.0
CSS0018966 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D023319 9.9e-64 246.5 115 100.0
CSS0007191 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 2.1e-42 175.6 108 80.6
CSS0007444 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 6.2e-42 174.1 108 79.6
CSS0032648 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.1e-41 173.3 108 79.6
Actinidia00284 Actinidia chinensis HOM05D000113 ORTHO05D005496 4.6e-37 157.9 124 65.3
Dinv24167 Davidia involucrata HOM05D000113 ORTHO05D005496 8.1e-34 147.1 108 65.7
Manes.10G103500 Manihot esculenta HOM05D000113 ORTHO05D005496 1.1e-33 146.7 107 66.4
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 4.0e-33 144.8 107 67.3
DCAR_014198 Daucus carota HOM05D000113 ORTHO05D005496 2.0e-32 142.5 109 64.2
Glyma.11G242300 Glycine max HOM05D000113 ORTHO05D005496 2.0e-32 142.5 107 64.5
Actinidia06536 Actinidia chinensis HOM05D000113 ORTHO05D005496 2.6e-32 142.1 107 65.4
Ca_16506_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 2.6e-32 142.1 107 63.6
Ca_30638_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 2.6e-32 142.1 107 63.6
Duzib264G0979 Durio zibethinus HOM05D000113 ORTHO05D005496 2.6e-32 142.1 107 66.4
Potri.017G050100 Populus trichocarpa HOM05D000113 ORTHO05D005496 2.6e-32 142.1 106 65.1
CSS0032056 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 3.4e-32 141.7 107 65.4
Medtr1g037750 Medicago truncatula HOM05D000113 ORTHO05D005496 3.4e-32 141.7 107 61.7
Medtr3g014030 Medicago truncatula HOM05D000113 ORTHO05D005496 3.4e-32 141.7 107 61.7
Rhsim10G0168800 Rhododendron simsii HOM05D000113 ORTHO05D005496 3.4e-32 141.7 107 62.6
Peaxi162Scf00237g01219 Petunia axillaris HOM05D000113 ORTHO05D005496 4.5e-32 141.4 108 63.9
SGA_v2.0_scaffold421G51436 Striga asiatica HOM05D000113 ORTHO05D005496 4.5e-32 141.4 119 57.1
Glyma.18G014800 Glycine max HOM05D000113 ORTHO05D005496 5.8e-32 141.0 107 64.5
Gohir.D10G101300 Gossypium hirsutum HOM05D000113 ORTHO05D005496 5.8e-32 141.0 107 65.4
Gorai.011G111000 Gossypium raimondii HOM05D000113 ORTHO05D005496 5.8e-32 141.0 107 65.4
vmacro12989 Vaccinium macrocarpon HOM05D000113 ORTHO05D005496 5.8e-32 141.0 107 62.6
CiPaw.04G104000 Carya illinoinensis HOM05D000113 ORTHO05D005496 7.6e-32 140.6 108 63.0
Gohir.A10G087100 Gossypium hirsutum HOM05D000113 ORTHO05D005496 7.6e-32 140.6 107 65.4
Oeu008640.1 Olea europaea HOM05D000113 ORTHO05D005496 7.6e-32 140.6 108 63.0
Sabra17G0036700 Salix brachista HOM05D000113 ORTHO05D005496 7.6e-32 140.6 106 63.2
Sabra17G0042100 Salix brachista HOM05D000113 ORTHO05D005496 7.6e-32 140.6 106 63.2
COL.COLO4_27299 Corchorus olitorius HOM05D000113 ORTHO05D005496 1.3e-31 139.8 107 64.5
Nn5g29984 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.3e-31 139.8 107 65.4
SGA_v2.0_scaffold108G30899 Striga asiatica HOM05D000113 ORTHO05D005496 1.3e-31 139.8 122 55.7
Ciclev10024688m.g Citrus clementina HOM05D000113 ORTHO05D005496 1.7e-31 139.4 107 65.4
Duzib147G1158 Durio zibethinus HOM05D000113 ORTHO05D005496 1.7e-31 139.4 107 63.6
Medtr3g086770 Medicago truncatula HOM05D000113 ORTHO05D005496 1.7e-31 139.4 107 63.6
Nitab4.5_0002334g0050 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.7e-31 139.4 108 62.0
Peaxi162Scf00569g00315 Petunia axillaris HOM05D000113 ORTHO05D005496 1.7e-31 139.4 108 62.0
Cc07_g14540 Coffea canephora HOM05D000113 ORTHO05D005496 2.2e-31 139.0 105 65.7
Cpa.g.sc55.67 Carica papaya HOM05D000113 ORTHO05D005496 2.9e-31 138.7 108 63.9
Lj5g0010678 Lotus japonicus HOM05D000113 ORTHO05D005496 2.9e-31 138.7 107 62.6
Lj6g0026739 Lotus japonicus HOM05D000113 ORTHO05D005496 2.9e-31 138.7 107 62.6
Prupe.6G193800 Prunus persica HOM05D000113 ORTHO05D005496 2.9e-31 138.7 107 62.6
TPR.G30542 Trifolium pratense HOM05D000113 ORTHO05D005496 2.9e-31 138.7 107 61.7
Dinv08866 Davidia involucrata HOM05D000113 ORTHO05D005496 3.8e-31 138.3 107 63.6
Eucgr.H04740 Eucalyptus grandis HOM05D000113 ORTHO05D005496 6.5e-31 137.5 108 61.1
Lalb_Chr23g0277561 Lupinus albus HOM05D000113 ORTHO05D005496 6.5e-31 137.5 107 61.7
CiPaw.03G146200 Carya illinoinensis HOM05D000113 ORTHO05D005496 1.1e-30 136.7 107 64.5
Phvul.001G254100 Phaseolus vulgaris HOM05D000113 ORTHO05D005496 1.1e-30 136.7 107 61.7
Potri.005G071500 Populus trichocarpa HOM05D000113 ORTHO05D005496 1.1e-30 136.7 108 62.0
Ah.02g126230 Amaranthus hybridus HOM05D000113 ORTHO05D005496 1.4e-30 136.3 125 56.0
Solyc04g014210.3 Solanum lycopersicum HOM05D000113 ORTHO05D005496 1.4e-30 136.3 108 61.1
Sopen04g006310 Solanum pennellii HOM05D000113 ORTHO05D005496 1.4e-30 136.3 108 61.1
MSTRG.2587 Avicennia marina HOM05D000113 ORTHO05D005496 2.5e-30 135.6 122 55.7
Lalb_Chr08g0230951 Lupinus albus HOM05D000113 ORTHO05D005496 2.5e-30 135.6 107 60.7
arahy.Tifrunner.gnm1.ann1.FHUE8B Arachis hypogaea HOM05D000113 ORTHO05D005496 3.2e-30 135.2 107 60.7
arahy.Tifrunner.gnm1.ann1.KS9FMV Arachis hypogaea HOM05D000113 ORTHO05D005496 3.2e-30 135.2 107 60.7
MBI02_g10702_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 3.2e-30 135.2 109 62.4
PGSC0003DMG400023635 Solanum tuberosum HOM05D000113 ORTHO05D005496 3.2e-30 135.2 108 60.2
Nitab4.5_0000241g0130 Nicotiana tabacum HOM05D000113 ORTHO05D005496 4.2e-30 134.8 108 61.1
Nitab4.5_0005930g0010 Nicotiana tabacum HOM05D000113 ORTHO05D005496 4.2e-30 134.8 108 61.1
MELO3C018998.2 Cucumis melo HOM05D000113 ORTHO05D005496 5.5e-30 134.4 124 57.3
CsaV3_4G009030 Cucumis sativus L. HOM05D000113 ORTHO05D005496 5.5e-30 134.4 124 57.3
Sc03g0000190 Simmondsia chinensis HOM05D000113 ORTHO05D005496 5.5e-30 134.4 107 62.6
VMungo1383G1146 Vigna mungo HOM05D000113 ORTHO05D005496 5.5e-30 134.4 107 62.6
Cfa002587 Carpinus fangiana HOM05D000113 ORTHO05D005496 9.3e-30 133.7 108 62.0
Sabra05G0058500 Salix brachista HOM05D000113 ORTHO05D005496 9.3e-30 133.7 144 50.7
CANSAT01G0367 Cannabis sativa HOM05D000113 ORTHO05D005496 1.6e-29 132.9 109 60.6
Haze_24824 Corylus avellana HOM05D000113 ORTHO05D005496 1.6e-29 132.9 108 62.0
Haze_24829 Corylus avellana HOM05D000113 ORTHO05D005496 1.6e-29 132.9 108 62.0
TAR628G1021 Trochodendron aralioides HOM05D000113 ORTHO05D005496 1.6e-29 132.9 107 62.6
Aqoxy4G02794 Aquilegia oxysepala HOM05D000113 ORTHO05D005496 2.1e-29 132.5 128 56.2
Nn5g29734 Nelumbo nucifera HOM05D000113 ORTHO05D005496 2.1e-29 132.5 107 62.6
Hund14100 Selenicereus undatus HOM05D000113 ORTHO05D005496 2.1e-29 132.5 125 56.8
TWI77G0223 Tripterygium wilfordii HOM05D000113 ORTHO05D005496 2.7e-29 132.1 132 56.8
Migut.H02323 Erythranthe guttata HOM05D000113 ORTHO05D005496 4.6e-29 131.3 107 59.8
Sopen11g005090 Solanum pennellii HOM05D000113 ORTHO05D005496 4.6e-29 131.3 108 58.3
CAN.G525.46 Capsicum annuum HOM05D000113 ORTHO05D005496 7.9e-29 130.6 108 59.3
FAN23G0752 Fragaria x ananassa HOM05D000113 ORTHO05D005496 7.9e-29 130.6 107 59.8
FAN26G3479 Fragaria x ananassa HOM05D000113 ORTHO05D005496 7.9e-29 130.6 107 59.8
FAN28G1056 Fragaria x ananassa HOM05D000113 ORTHO05D005496 7.9e-29 130.6 107 59.8
MD01G1036600 Malus domestica HOM05D000113 ORTHO05D005496 7.9e-29 130.6 107 60.7
TPR.G1396 Trifolium pratense HOM05D000113 ORTHO05D005496 7.9e-29 130.6 108 60.2
HanXRQChr15g0469421 Helianthus annuus HOM05D000113 ORTHO05D005496 1.0e-28 130.2 105 60.0
Lsat_1_v5_gn_5_44701 Lactuca sativa HOM05D000113 ORTHO05D005496 1.8e-28 129.4 123 55.3
PGR102G0466 Punica granatum HOM05D000113 ORTHO05D005496 1.8e-28 129.4 104 59.6
EL10Ac6g14815 Beta vulgaris HOM05D000113 ORTHO05D005496 2.3e-28 129.0 136 50.7
AUR62003267 Chenopodium quinoa HOM05D000113 ORTHO05D005496 2.3e-28 129.0 136 52.9
Gorai.003G041600 Gossypium raimondii HOM05D000113 ORTHO05D005496 2.3e-28 129.0 107 60.7
RcHm_v2.0_Chr2g0112281 Rosa chinensis HOM05D000113 ORTHO05D005496 3.0e-28 128.6 107 59.8
AUR62027200 Chenopodium quinoa HOM05D000113 ORTHO05D005496 3.9e-28 128.3 136 52.9
FvH4_1g20200 Fragaria vesca HOM05D000113 ORTHO05D005496 3.9e-28 128.3 107 58.9
FAN19G2146 Fragaria x ananassa HOM05D000113 ORTHO05D005496 3.9e-28 128.3 107 58.9
Gohir.D03G040800 Gossypium hirsutum HOM05D000113 ORTHO05D005496 3.9e-28 128.3 107 60.7
QL06p047959 Quercus lobata HOM05D000113 ORTHO05D005496 5.1e-28 127.9 122 54.9
PGSC0003DMG400016218 Solanum tuberosum HOM05D000113 ORTHO05D005496 6.7e-28 127.5 108 57.4
PGSC0003DMG402016146 Solanum tuberosum HOM05D000113 ORTHO05D005496 6.7e-28 127.5 108 57.4
THA.LOC104798664 Tarenaya hassleriana HOM05D000113 ORTHO05D005496 6.7e-28 127.5 123 52.8
Psat1g084000 Pisum sativum HOM05D000113 ORTHO05D005496 8.7e-28 127.1 108 58.3
Sed0023847 Sechium edule HOM05D000113 ORTHO05D005496 8.7e-28 127.1 108 60.2
Solyc11g010310.2 Solanum lycopersicum HOM05D000113 ORTHO05D005496 8.7e-28 127.1 108 57.4
Gohir.A02G129900 Gossypium hirsutum HOM05D000113 ORTHO05D005496 1.1e-27 126.7 107 59.8
SEGI_02546 Sequoiadendron giganteum HOM05D000113 ORTHO05D005496 1.5e-27 126.3 103 59.2
Atru.chr3.1339 Acer truncatum HOM05D000113 ORTHO05D005496 1.9e-27 125.9 107 60.7
ATR0807G003 Amborella trichopoda HOM05D000113 ORTHO05D005496 1.9e-27 125.9 124 51.6
MBI06_g03318_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 2.5e-27 125.6 109 56.9
Aa31LG3G16810 Aethionema arabicum HOM05D000113 ORTHO05D005496 3.3e-27 125.2 110 54.5
ClCG10G008390 Citrullus lanatus HOM05D000113 ORTHO05D005496 3.3e-27 125.2 108 59.3
Os07g0621500 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D005496 4.3e-27 124.8 130 50.0
ECA246G2046 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.4e-27 124.0 107 58.9
BcaB08g37113 Brassica carinata HOM05D000113 ORTHO05D005496 6.3e-26 120.9 123 50.4
Sp6g33080 Schrenkiella parvula HOM05D000113 ORTHO05D005496 6.3e-26 120.9 123 50.4
CAN.G905.7 Capsicum annuum HOM05D000113 ORTHO05D005496 1.4e-25 119.8 108 53.7
Thhalv10012419m.g Eutrema salsugineum HOM05D000113 ORTHO05D005496 1.8e-25 119.4 123 48.8
PSO700G0222 Papaver somniferum HOM05D000113 ORTHO05D005496 1.8e-25 119.4 123 52.8
PSO761G0046 Papaver somniferum HOM05D000113 ORTHO05D005496 1.8e-25 119.4 123 52.8
BcaC04g19309 Brassica carinata HOM05D000113 ORTHO05D005496 2.4e-25 119.0 123 48.8
C09p67040 Brassica napus HOM05D000113 ORTHO05D005496 3.1e-25 118.6 123 48.8
BolC9t59477H Brassica oleracea HOM05D000113 ORTHO05D005496 3.1e-25 118.6 123 48.8
BcaB01g05540 Brassica carinata HOM05D000113 ORTHO05D005496 4.1e-25 118.2 124 50.0
A03p04500 Brassica napus HOM05D000113 ORTHO05D005496 9.0e-25 117.1 124 49.2
C03p05000 Brassica napus HOM05D000113 ORTHO05D005496 9.0e-25 117.1 124 49.2
BolC3t13030H Brassica oleracea HOM05D000113 ORTHO05D005496 9.0e-25 117.1 124 49.2
AT4G01020 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 1.2e-24 116.7 123 48.8
Carub.0006s0884 Capsella rubella HOM05D000113 ORTHO05D005496 1.5e-24 116.3 107 53.3
SalBow1G6336 Salvia bowleyana HOM05D000113 ORTHO05D005496 1.5e-24 116.3 107 54.2
AL6G20870 Arabidopsis lyrata HOM05D000113 ORTHO05D005496 2.0e-24 115.9 123 48.0
BraA03t09794Z Brassica rapa HOM05D000113 ORTHO05D005496 2.0e-24 115.9 124 48.4
CARHR202930 Cardamine hirsuta HOM05D000113 ORTHO05D005496 2.6e-24 115.5 123 47.2
AT5G10370 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 3.4e-24 115.2 123 48.8
BraA10t44773Z Brassica rapa HOM05D000113 ORTHO05D005496 3.4e-24 115.2 123 48.0
A10p27230 Brassica napus HOM05D000113 ORTHO05D005496 7.6e-24 114.0 123 47.2
CDE10G0712 Ceratophyllum demersum HOM05D000113 ORTHO05D005496 1.0e-23 113.6 106 54.7
Zm00001eb327760 Zea mays HOM05D000113 ORTHO05D005496 5.0e-23 111.3 125 48.8
Lj2C539T3 Lonicera japonica HOM05D000113 ORTHO05D005496 2.7e-21 105.5 91 61.5
HPP92_010964 Vanilla planifolia HOM05D000113 ORTHO05D005496 3.5e-21 105.1 111 49.5
Sed0005908 Sechium edule HOM05D000113 ORTHO05D005496 5.1e-20 101.3 97 52.6
Psat3g119320 Pisum sativum HOM05D000113 ORTHO05D023319 9.7e-19 97.1 80 56.2
Nitab4.5_0005401g0080 Nicotiana tabacum HOM05D000113 ORTHO05D023319 4.8e-18 94.7 117 47.0
Mapoly0046s0024 Marchantia polymorpha HOM05D000113 ORTHO05D005496 5.0e-15 84.7 103 41.7
CAN.G960.13 Capsicum annuum HOM05D000113 ORTHO05D021107 3.1e-09 65.5 54 59.3
CAN.G388.7 Capsicum annuum HOM05D000113 ORTHO05D021107 6.9e-09 64.3 51 60.8
CAN.G1546.4 Capsicum annuum HOM05D000113 ORTHO05D021107 5.9e-08 61.2 69 47.8
BcaB06g26902 Brassica carinata HOM05D000113 ORTHO05D005496 1.7e-07 59.7 51 58.8
Actinidia24009 Actinidia chinensis HOM05D000113 ORTHO05D023319 2.9e-07 58.9 83 48.2
BcaB06g26892 Brassica carinata HOM05D000113 ORTHO05D005496 1.4e-06 56.6 51 54.9


User provided reference genes

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