Gene: Sopen11g005090

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g005090
  • Transcript Identifier Sopen11g005090.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 3526258-3533090 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g005090.1

Descriptions

  • Description helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | FUNCTIONS IN: in 6 functions | LOCATED IN: intracellular, chloroplast | CONTAINS InterPro DOMAIN/s: Helicase-associated domain , Zinc finger, C2H2-like , Zinc finger, RING-type, conserved site , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , Domain of unknown function DUF1605 , Zinc finger, C6HC-type , Zinc finger, RING-type , K Homology , DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Zinc finger, C2H2-type , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
InterProhelicase activity
GO:0003723
IEA
InterProRNA binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR007502 Helicase-associated domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001650 Helicase, C-terminal
IPR002867 IBR domain
IPR036612 K Homology domain, type 1 superfamily
Mapman id Description
19.2.2.1.4.4.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.E3 ubiquitin ligase (RBR-Helicase)