Gene: CiPaw.04G104000
General Information
Structural Information
- Species Carya illinoinensis
- Gene Identifier CiPaw.04G104000
- Transcript Identifier CiPaw.04G104000.1
- Gene Type Coding gene
- Location Chr04 : 12914300-12922582 : positive
Gene Family Information
- ID HOM05D000113
- #Genes/#Species 2932/100
- Phylogenetic origin
- ID ORTHO05D005496
- #Genes/#Species 156/90
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id CiPaw.04G104000.v1.1
- pacid 45829540
- locus Caril.04G103400
Descriptions
- Description PF00271//PF01485//PF04408//PF07717 - Helicase conserved C-terminal domain (Helicase_C) // IBR domain, a half RING-finger domain (IBR) // Helicase associated domain (HA2) (HA2) // Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc04g014210.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D000113 |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc04g014210.3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR042035 | DEAH helicase, winged-helix domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007502 | Helicase-associated domain |
| IPR011709 | Domain of unknown function DUF1605 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR002867 | IBR domain |
| IPR001841 | Zinc finger, RING-type |
| Mapman id | Description |
|---|---|
| 19.2.2.1.4.4.3 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.E3 ubiquitin ligase (RBR-Helicase) |