Gene: COL.COLO4_27299

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_27299
  • Transcript Identifier COL.rna26025
  • Gene Type Coding gene
  • Location AWUE01019527.1 : 20751-27949 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna26025
  • GenBank OMO73041.1
  • id gene27271
  • gene_name COLO4_27299
  • uniprot A0A1R3HS85

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc04g014210.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc04g014210.3
GO:0004386
ISO
PLAZA Homology (enrichment)helicase activity HOM05D000113

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002867 IBR domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR042035 DEAH helicase, winged-helix domain
Mapman id Description
19.2.2.1.4.4.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.E3 ubiquitin ligase (RBR-Helicase)