Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1546.5 Capsicum annuum HOM05D000113 ORTHO05D021107 1.2e-115 419.9 209 100.0
CAN.G905.7 Capsicum annuum HOM05D000113 ORTHO05D005496 1.3e-82 310.1 234 70.1
CAN.G388.7 Capsicum annuum HOM05D000113 ORTHO05D021107 6.6e-74 281.2 205 70.2
PGSC0003DMG400016218 Solanum tuberosum HOM05D000113 ORTHO05D005496 6.6e-74 281.2 234 64.1
PGSC0003DMG402016146 Solanum tuberosum HOM05D000113 ORTHO05D005496 6.6e-74 281.2 234 64.1
Sopen11g005090 Solanum pennellii HOM05D000113 ORTHO05D005496 1.9e-73 279.6 234 63.2
Solyc11g010310.2 Solanum lycopersicum HOM05D000113 ORTHO05D005496 5.6e-73 278.1 234 63.2
Nitab4.5_0000241g0130 Nicotiana tabacum HOM05D000113 ORTHO05D005496 6.4e-69 264.6 235 60.4
Nitab4.5_0005930g0010 Nicotiana tabacum HOM05D000113 ORTHO05D005496 8.3e-69 264.2 235 60.0
Peaxi162Scf00237g01219 Petunia axillaris HOM05D000113 ORTHO05D005496 8.3e-69 264.2 235 59.1
Peaxi162Scf00569g00315 Petunia axillaris HOM05D000113 ORTHO05D005496 5.6e-65 251.5 235 58.3
CAN.G525.46 Capsicum annuum HOM05D000113 ORTHO05D005496 4.4e-62 241.9 234 56.0
Nitab4.5_0002334g0050 Nicotiana tabacum HOM05D000113 ORTHO05D005496 3.7e-61 238.8 235 55.3
Sopen04g006310 Solanum pennellii HOM05D000113 ORTHO05D005496 4.9e-61 238.4 234 54.3
Solyc04g014210.3 Solanum lycopersicum HOM05D000113 ORTHO05D005496 1.1e-60 237.3 234 53.8
PGSC0003DMG400023635 Solanum tuberosum HOM05D000113 ORTHO05D005496 1.9e-60 236.5 234 53.8
CAN.G1463.6 Capsicum annuum HOM05D000113 ORTHO05D021107 9.2e-60 234.2 207 61.4
CAN.G960.13 Capsicum annuum HOM05D000113 ORTHO05D021107 4.7e-56 221.9 223 53.8
Lj2C539T3 Lonicera japonica HOM05D000113 ORTHO05D005496 6.2e-56 221.5 234 49.1
CSS0032056 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 2.3e-50 203.0 233 48.1
MSTRG.2587 Avicennia marina HOM05D000113 ORTHO05D005496 1.9e-49 199.9 235 45.1
Dinv08866 Davidia involucrata HOM05D000113 ORTHO05D005496 3.3e-49 199.1 235 46.0
Actinidia06536 Actinidia chinensis HOM05D000113 ORTHO05D005496 4.3e-49 198.7 235 46.8
Ciclev10024688m.g Citrus clementina HOM05D000113 ORTHO05D005496 5.6e-49 198.4 235 45.5
Gorai.011G111000 Gossypium raimondii HOM05D000113 ORTHO05D005496 7.3e-49 198.0 235 45.5
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 9.5e-49 197.6 238 46.2
Gohir.D10G101300 Gossypium hirsutum HOM05D000113 ORTHO05D005496 1.2e-48 197.2 235 45.5
Cc07_g14540 Coffea canephora HOM05D000113 ORTHO05D005496 3.6e-48 195.7 235 45.1
Duzib264G0979 Durio zibethinus HOM05D000113 ORTHO05D005496 3.6e-48 195.7 235 44.3
Gohir.A10G087100 Gossypium hirsutum HOM05D000113 ORTHO05D005496 3.6e-48 195.7 235 45.1
Prupe.6G193800 Prunus persica HOM05D000113 ORTHO05D005496 4.0e-47 192.2 233 44.6
MD01G1036600 Malus domestica HOM05D000113 ORTHO05D005496 5.2e-47 191.8 235 45.1
FAN26G3479 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.5e-46 190.3 234 45.3
FvH4_1g20200 Fragaria vesca HOM05D000113 ORTHO05D005496 2.0e-46 189.9 234 45.3
FAN19G2146 Fragaria x ananassa HOM05D000113 ORTHO05D005496 2.0e-46 189.9 234 45.3
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.4e-46 188.7 187 56.7
Duzib147G1158 Durio zibethinus HOM05D000113 ORTHO05D005496 5.8e-46 188.3 235 42.6
COL.COLO4_27299 Corchorus olitorius HOM05D000113 ORTHO05D005496 7.6e-46 188.0 235 44.3
Migut.H02323 Erythranthe guttata HOM05D000113 ORTHO05D005496 7.6e-46 188.0 234 44.0
RcHm_v2.0_Chr2g0112281 Rosa chinensis HOM05D000113 ORTHO05D005496 9.9e-46 187.6 231 43.7
CiPaw.04G104000 Carya illinoinensis HOM05D000113 ORTHO05D005496 1.7e-45 186.8 231 43.7
Dinv24167 Davidia involucrata HOM05D000113 ORTHO05D005496 3.8e-45 185.7 238 42.4
Sc03g0000190 Simmondsia chinensis HOM05D000113 ORTHO05D005496 4.9e-45 185.3 235 43.4
Atru.chr3.1339 Acer truncatum HOM05D000113 ORTHO05D005496 6.4e-45 184.9 234 44.0
AUR62027200 Chenopodium quinoa HOM05D000113 ORTHO05D005496 6.4e-45 184.9 236 44.9
FAN23G0752 Fragaria x ananassa HOM05D000113 ORTHO05D005496 6.4e-45 184.9 234 44.4
SGA_v2.0_scaffold421G51436 Striga asiatica HOM05D000113 ORTHO05D005496 6.4e-45 184.9 234 42.3
TAR628G1021 Trochodendron aralioides HOM05D000113 ORTHO05D005496 6.4e-45 184.9 235 43.4
FAN28G1056 Fragaria x ananassa HOM05D000113 ORTHO05D005496 8.4e-45 184.5 234 44.0
QL06p047959 Quercus lobata HOM05D000113 ORTHO05D005496 8.4e-45 184.5 231 43.3
CiPaw.03G146200 Carya illinoinensis HOM05D000113 ORTHO05D005496 1.1e-44 184.1 235 43.8
Cpa.g.sc55.67 Carica papaya HOM05D000113 ORTHO05D005496 1.4e-44 183.7 233 44.2
AUR62003267 Chenopodium quinoa HOM05D000113 ORTHO05D005496 1.4e-44 183.7 236 43.2
DCAR_014198 Daucus carota HOM05D000113 ORTHO05D005496 2.4e-44 183.0 234 44.9
PSO761G0046 Papaver somniferum HOM05D000113 ORTHO05D005496 2.4e-44 183.0 237 40.5
Hund14100 Selenicereus undatus HOM05D000113 ORTHO05D005496 3.2e-44 182.6 236 42.4
MBI06_g03318_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 5.4e-44 181.8 236 43.2
PGR102G0466 Punica granatum HOM05D000113 ORTHO05D005496 7.1e-44 181.4 238 42.4
Gorai.003G041600 Gossypium raimondii HOM05D000113 ORTHO05D005496 1.2e-43 180.6 235 42.6
Nn5g29734 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.6e-43 180.3 237 41.8
PSO700G0222 Papaver somniferum HOM05D000113 ORTHO05D005496 2.1e-43 179.9 237 40.1
Gohir.D03G040800 Gossypium hirsutum HOM05D000113 ORTHO05D005496 3.5e-43 179.1 235 42.6
Sabra05G0058500 Salix brachista HOM05D000113 ORTHO05D005496 3.5e-43 179.1 233 42.1
Gohir.A02G129900 Gossypium hirsutum HOM05D000113 ORTHO05D005496 4.6e-43 178.7 235 42.1
Potri.005G071500 Populus trichocarpa HOM05D000113 ORTHO05D005496 4.6e-43 178.7 233 40.8
CANSAT01G0367 Cannabis sativa HOM05D000113 ORTHO05D005496 6.0e-43 178.3 236 43.2
Rhsim10G0168800 Rhododendron simsii HOM05D000113 ORTHO05D005496 6.0e-43 178.3 241 42.7
Nn5g29984 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.0e-42 177.6 237 41.8
TPR.G30542 Trifolium pratense HOM05D000113 ORTHO05D005496 1.3e-42 177.2 234 41.5
VMungo1383G1146 Vigna mungo HOM05D000113 ORTHO05D005496 1.3e-42 177.2 237 40.5
CSS0007444 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 5.1e-42 175.3 238 41.6
CSS0032648 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 5.1e-42 175.3 238 41.6
Eucgr.H04740 Eucalyptus grandis HOM05D000113 ORTHO05D005496 5.1e-42 175.3 240 40.0
MBI02_g10702_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 5.1e-42 175.3 236 41.1
Medtr3g086770 Medicago truncatula HOM05D000113 ORTHO05D005496 6.6e-42 174.9 234 40.6
Psat1g084000 Pisum sativum HOM05D000113 ORTHO05D005496 6.6e-42 174.9 234 40.2
Actinidia00284 Actinidia chinensis HOM05D000113 ORTHO05D005496 1.1e-41 174.1 238 40.3
Cfa002587 Carpinus fangiana HOM05D000113 ORTHO05D005496 1.1e-41 174.1 235 40.0
Glyma.18G014800 Glycine max HOM05D000113 ORTHO05D005496 1.5e-41 173.7 235 40.4
Aqoxy4G02794 Aquilegia oxysepala HOM05D000113 ORTHO05D005496 2.5e-41 172.9 237 40.5
EL10Ac6g14815 Beta vulgaris HOM05D000113 ORTHO05D005496 2.5e-41 172.9 236 41.1
Lsat_1_v5_gn_5_44701 Lactuca sativa HOM05D000113 ORTHO05D005496 2.5e-41 172.9 234 38.9
Ca_16506_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 4.3e-41 172.2 234 39.7
Ca_30638_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 4.3e-41 172.2 234 39.7
Haze_24824 Corylus avellana HOM05D000113 ORTHO05D005496 4.3e-41 172.2 235 40.4
Haze_24829 Corylus avellana HOM05D000113 ORTHO05D005496 4.3e-41 172.2 235 40.4
Phvul.001G254100 Phaseolus vulgaris HOM05D000113 ORTHO05D005496 5.6e-41 171.8 236 40.7
Zm00001eb327760 Zea mays HOM05D000113 ORTHO05D005496 5.6e-41 171.8 234 40.6
Glyma.11G242300 Glycine max HOM05D000113 ORTHO05D005496 1.3e-40 170.6 235 40.0
SGA_v2.0_scaffold108G30899 Striga asiatica HOM05D000113 ORTHO05D005496 1.3e-40 170.6 239 38.9
Lj6g0026739 Lotus japonicus HOM05D000113 ORTHO05D005496 2.1e-40 169.9 234 41.0
SalBow1G6336 Salvia bowleyana HOM05D000113 ORTHO05D005496 2.1e-40 169.9 233 40.8
Ah.02g126230 Amaranthus hybridus HOM05D000113 ORTHO05D005496 4.8e-40 168.7 236 39.8
Sabra17G0036700 Salix brachista HOM05D000113 ORTHO05D005496 8.1e-40 167.9 238 40.8
Sabra17G0042100 Salix brachista HOM05D000113 ORTHO05D005496 8.1e-40 167.9 238 40.8
arahy.Tifrunner.gnm1.ann1.FHUE8B Arachis hypogaea HOM05D000113 ORTHO05D005496 1.1e-39 167.5 232 40.9
arahy.Tifrunner.gnm1.ann1.KS9FMV Arachis hypogaea HOM05D000113 ORTHO05D005496 1.1e-39 167.5 232 41.4
Lj5g0010678 Lotus japonicus HOM05D000113 ORTHO05D005496 1.4e-39 167.2 234 40.2
ECA246G2046 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-39 166.4 236 40.3
Os07g0621500 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D005496 4.0e-39 165.6 237 38.0
TWI77G0223 Tripterygium wilfordii HOM05D000113 ORTHO05D005496 6.9e-39 164.9 235 40.9
Aa31LG3G16810 Aethionema arabicum HOM05D000113 ORTHO05D005496 1.5e-38 163.7 236 38.6
Nitab4.5_0005401g0050 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.5e-38 163.7 186 51.6
THA.LOC104798664 Tarenaya hassleriana HOM05D000113 ORTHO05D005496 1.5e-38 163.7 236 39.0
Potri.017G050100 Populus trichocarpa HOM05D000113 ORTHO05D005496 2.0e-38 163.3 238 39.9
TPR.G1396 Trifolium pratense HOM05D000113 ORTHO05D005496 4.4e-38 162.2 234 38.9
CSS0007191 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.3e-37 160.6 223 43.9
Lalb_Chr08g0230951 Lupinus albus HOM05D000113 ORTHO05D005496 2.2e-37 159.8 234 40.2
Lalb_Chr23g0277561 Lupinus albus HOM05D000113 ORTHO05D005496 2.2e-37 159.8 234 39.3
Manes.10G103500 Manihot esculenta HOM05D000113 ORTHO05D005496 4.9e-37 158.7 238 37.0
Medtr1g037750 Medicago truncatula HOM05D000113 ORTHO05D005496 4.9e-37 158.7 234 38.0
Medtr3g014030 Medicago truncatula HOM05D000113 ORTHO05D005496 4.9e-37 158.7 234 38.0
A03p04500 Brassica napus HOM05D000113 ORTHO05D005496 6.4e-37 158.3 236 37.7
BraA03t09794Z Brassica rapa HOM05D000113 ORTHO05D005496 6.4e-37 158.3 236 37.7
CDE10G0712 Ceratophyllum demersum HOM05D000113 ORTHO05D005496 6.4e-37 158.3 236 37.7
C03p05000 Brassica napus HOM05D000113 ORTHO05D005496 1.1e-36 157.5 236 37.3
BolC3t13030H Brassica oleracea HOM05D000113 ORTHO05D005496 1.9e-36 156.8 236 37.3
BcaB01g05540 Brassica carinata HOM05D000113 ORTHO05D005496 4.2e-36 155.6 236 36.9
AL6G20870 Arabidopsis lyrata HOM05D000113 ORTHO05D005496 5.4e-36 155.2 236 36.0
HPP92_010964 Vanilla planifolia HOM05D000113 ORTHO05D005496 5.4e-36 155.2 232 37.5
AT4G01020 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 2.1e-35 153.3 236 36.0
MELO3C018998.2 Cucumis melo HOM05D000113 ORTHO05D005496 2.1e-35 153.3 236 38.6
BcaB06g26892 Brassica carinata HOM05D000113 ORTHO05D005496 6.0e-35 151.8 236 36.9
HanXRQChr15g0469421 Helianthus annuus HOM05D000113 ORTHO05D005496 6.0e-35 151.8 238 37.0
ATR0807G003 Amborella trichopoda HOM05D000113 ORTHO05D005496 7.8e-35 151.4 239 36.8
BcaB06g26902 Brassica carinata HOM05D000113 ORTHO05D005496 7.8e-35 151.4 236 37.3
C09p67040 Brassica napus HOM05D000113 ORTHO05D005496 7.8e-35 151.4 239 38.1
Oeu008640.1 Olea europaea HOM05D000113 ORTHO05D005496 1.0e-34 151.0 122 59.8
Sp6g33080 Schrenkiella parvula HOM05D000113 ORTHO05D005496 1.3e-34 150.6 236 35.6
unitig_899.g14557 Utricularia gibba HOM05D000113 ORTHO05D005496 1.3e-34 150.6 236 39.0
BcaB08g37113 Brassica carinata HOM05D000113 ORTHO05D005496 2.3e-34 149.8 234 36.3
AT5G10370 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 3.0e-34 149.4 236 35.2
ClCG10G008390 Citrullus lanatus HOM05D000113 ORTHO05D005496 3.0e-34 149.4 236 37.3
BolC9t59477H Brassica oleracea HOM05D000113 ORTHO05D005496 3.9e-34 149.1 239 37.7
BcaC04g19309 Brassica carinata HOM05D000113 ORTHO05D005496 5.1e-34 148.7 239 37.7
CsaV3_4G009030 Cucumis sativus L. HOM05D000113 ORTHO05D005496 5.1e-34 148.7 236 36.9
Carub.0006s0884 Capsella rubella HOM05D000113 ORTHO05D005496 6.6e-34 148.3 234 34.6
Sed0023847 Sechium edule HOM05D000113 ORTHO05D005496 6.6e-34 148.3 237 38.4
A10p27230 Brassica napus HOM05D000113 ORTHO05D005496 9.6e-33 144.4 240 36.2
CARHR202930 Cardamine hirsuta HOM05D000113 ORTHO05D005496 1.3e-32 144.1 236 34.7
CAN.G1546.4 Capsicum annuum HOM05D000113 ORTHO05D021107 2.8e-32 142.9 152 52.0
SEGI_02546 Sequoiadendron giganteum HOM05D000113 ORTHO05D005496 2.8e-32 142.9 240 34.2
BraA10t44773Z Brassica rapa HOM05D000113 ORTHO05D005496 3.1e-31 139.4 235 34.9
Thhalv10012419m.g Eutrema salsugineum HOM05D000113 ORTHO05D005496 6.9e-31 138.3 236 33.5
vmacro12989 Vaccinium macrocarpon HOM05D000113 ORTHO05D005496 1.2e-22 110.9 237 35.0
Sed0005908 Sechium edule HOM05D000113 ORTHO05D005496 4.9e-21 105.5 135 43.0
Mapoly0046s0024 Marchantia polymorpha HOM05D000113 ORTHO05D005496 7.9e-19 98.2 251 29.1
Actinidia24008 Actinidia chinensis HOM05D000113 ORTHO05D021107 3.2e-12 76.3 94 42.6


User provided reference genes

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