Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1463.6 Capsicum annuum HOM05D000113 ORTHO05D021107 1.1e-184 649.8 324 100.0
CAN.G905.7 Capsicum annuum HOM05D000113 ORTHO05D005496 2.0e-98 363.2 278 69.1
PGSC0003DMG400016218 Solanum tuberosum HOM05D000113 ORTHO05D005496 3.1e-86 322.8 275 62.9
Nitab4.5_0005930g0010 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.2e-85 320.9 278 62.2
Solyc11g010310.2 Solanum lycopersicum HOM05D000113 ORTHO05D005496 1.2e-85 320.9 275 62.5
Sopen11g005090 Solanum pennellii HOM05D000113 ORTHO05D005496 1.5e-85 320.5 275 62.2
Nitab4.5_0000241g0130 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.3e-84 317.4 278 61.9
Peaxi162Scf00237g01219 Petunia axillaris HOM05D000113 ORTHO05D005496 7.8e-82 308.1 278 59.4
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.8e-79 299.7 198 77.3
Peaxi162Scf00569g00315 Petunia axillaris HOM05D000113 ORTHO05D005496 6.8e-78 295.0 277 56.7
Nitab4.5_0002334g0050 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.3e-76 290.8 277 56.0
CAN.G525.46 Capsicum annuum HOM05D000113 ORTHO05D005496 6.4e-76 288.5 284 55.6
PGSC0003DMG402016146 Solanum tuberosum HOM05D000113 ORTHO05D005496 1.6e-74 283.9 242 62.4
Solyc04g014210.3 Solanum lycopersicum HOM05D000113 ORTHO05D005496 3.5e-74 282.7 281 53.7
Sopen04g006310 Solanum pennellii HOM05D000113 ORTHO05D005496 6.0e-74 282.0 281 53.7
PGSC0003DMG400023635 Solanum tuberosum HOM05D000113 ORTHO05D005496 1.3e-73 280.8 281 53.4
CAN.G388.7 Capsicum annuum HOM05D000113 ORTHO05D021107 6.6e-73 278.5 233 65.2
Lj2C539T3 Lonicera japonica HOM05D000113 ORTHO05D005496 6.2e-71 271.9 278 50.0
Actinidia06536 Actinidia chinensis HOM05D000113 ORTHO05D005496 2.5e-64 250.0 286 49.0
Dinv08866 Davidia involucrata HOM05D000113 ORTHO05D005496 1.6e-63 247.3 273 49.5
MSTRG.2587 Avicennia marina HOM05D000113 ORTHO05D005496 1.1e-62 244.6 283 45.2
CSS0032056 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.8e-62 243.8 278 47.5
CAN.G960.13 Capsicum annuum HOM05D000113 ORTHO05D021107 1.5e-61 240.7 231 56.3
Duzib264G0979 Durio zibethinus HOM05D000113 ORTHO05D005496 2.6e-61 240.0 278 48.2
Potri.005G071500 Populus trichocarpa HOM05D000113 ORTHO05D005496 3.4e-61 239.6 276 46.7
Sabra05G0058500 Salix brachista HOM05D000113 ORTHO05D005496 1.7e-60 237.3 276 46.7
CAN.G1546.5 Capsicum annuum HOM05D000113 ORTHO05D021107 2.9e-60 236.5 207 61.4
Gohir.D10G101300 Gossypium hirsutum HOM05D000113 ORTHO05D005496 2.9e-60 236.5 276 47.5
Gorai.011G111000 Gossypium raimondii HOM05D000113 ORTHO05D005496 2.9e-60 236.5 276 47.5
Cc07_g14540 Coffea canephora HOM05D000113 ORTHO05D005496 4.9e-60 235.7 277 46.2
Gohir.A10G087100 Gossypium hirsutum HOM05D000113 ORTHO05D005496 6.4e-60 235.3 276 47.5
Ciclev10024688m.g Citrus clementina HOM05D000113 ORTHO05D005496 2.4e-59 233.4 295 45.1
SGA_v2.0_scaffold421G51436 Striga asiatica HOM05D000113 ORTHO05D005496 2.4e-59 233.4 275 47.3
Atru.chr3.1339 Acer truncatum HOM05D000113 ORTHO05D005496 3.2e-59 233.0 276 46.7
Cpa.g.sc55.67 Carica papaya HOM05D000113 ORTHO05D005496 4.2e-59 232.6 275 46.9
QL06p047959 Quercus lobata HOM05D000113 ORTHO05D005496 1.6e-58 230.7 275 45.1
Duzib147G1158 Durio zibethinus HOM05D000113 ORTHO05D005496 2.7e-58 229.9 278 47.1
DCAR_014198 Daucus carota HOM05D000113 ORTHO05D005496 3.5e-58 229.6 275 46.2
TAR628G1021 Trochodendron aralioides HOM05D000113 ORTHO05D005496 4.6e-58 229.2 279 45.9
CAN.G1546.4 Capsicum annuum HOM05D000113 ORTHO05D021107 7.8e-58 228.4 149 76.5
AUR62027200 Chenopodium quinoa HOM05D000113 ORTHO05D005496 7.8e-58 228.4 283 45.9
arahy.Tifrunner.gnm1.ann1.FHUE8B Arachis hypogaea HOM05D000113 ORTHO05D005496 2.3e-57 226.9 278 44.6
Rhsim10G0168800 Rhododendron simsii HOM05D000113 ORTHO05D005496 2.3e-57 226.9 294 45.6
CSS0007191 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 3.0e-57 226.5 260 47.7
AUR62003267 Chenopodium quinoa HOM05D000113 ORTHO05D005496 3.0e-57 226.5 276 46.0
COL.COLO4_27299 Corchorus olitorius HOM05D000113 ORTHO05D005496 3.9e-57 226.1 277 47.7
CiPaw.04G104000 Carya illinoinensis HOM05D000113 ORTHO05D005496 5.1e-57 225.7 276 44.6
Gorai.003G041600 Gossypium raimondii HOM05D000113 ORTHO05D005496 5.1e-57 225.7 283 45.9
arahy.Tifrunner.gnm1.ann1.KS9FMV Arachis hypogaea HOM05D000113 ORTHO05D005496 1.5e-56 224.2 278 44.2
MD01G1036600 Malus domestica HOM05D000113 ORTHO05D005496 1.5e-56 224.2 277 44.0
Hund14100 Selenicereus undatus HOM05D000113 ORTHO05D005496 1.5e-56 224.2 279 43.4
CiPaw.03G146200 Carya illinoinensis HOM05D000113 ORTHO05D005496 1.9e-56 223.8 276 45.7
Gohir.A02G129900 Gossypium hirsutum HOM05D000113 ORTHO05D005496 1.9e-56 223.8 283 45.6
Nn5g29984 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.9e-56 223.8 285 43.5
Glyma.18G014800 Glycine max HOM05D000113 ORTHO05D005496 7.3e-56 221.9 278 43.2
Gohir.D03G040800 Gossypium hirsutum HOM05D000113 ORTHO05D005496 9.6e-56 221.5 283 45.6
CANSAT01G0367 Cannabis sativa HOM05D000113 ORTHO05D005496 1.3e-55 221.1 278 45.0
EL10Ac6g14815 Beta vulgaris HOM05D000113 ORTHO05D005496 1.6e-55 220.7 276 42.8
Phvul.001G254100 Phaseolus vulgaris HOM05D000113 ORTHO05D005496 2.1e-55 220.3 296 42.2
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 2.8e-55 219.9 276 45.7
Cfa002587 Carpinus fangiana HOM05D000113 ORTHO05D005496 3.6e-55 219.5 275 43.3
Nn5g29734 Nelumbo nucifera HOM05D000113 ORTHO05D005496 3.6e-55 219.5 278 42.8
CSS0007444 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 6.2e-55 218.8 280 44.3
CSS0032648 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 6.2e-55 218.8 280 44.3
SGA_v2.0_scaffold108G30899 Striga asiatica HOM05D000113 ORTHO05D005496 6.2e-55 218.8 281 43.4
Haze_24824 Corylus avellana HOM05D000113 ORTHO05D005496 8.1e-55 218.4 275 42.9
Haze_24829 Corylus avellana HOM05D000113 ORTHO05D005496 8.1e-55 218.4 275 42.9
MBI06_g03318_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 1.1e-54 218.0 278 45.0
Lsat_1_v5_gn_5_44701 Lactuca sativa HOM05D000113 ORTHO05D005496 1.4e-54 217.6 271 45.0
VMungo1383G1146 Vigna mungo HOM05D000113 ORTHO05D005496 2.4e-54 216.9 274 42.7
Zm00001eb327760 Zea mays HOM05D000113 ORTHO05D005496 2.4e-54 216.9 273 42.9
Eucgr.H04740 Eucalyptus grandis HOM05D000113 ORTHO05D005496 3.1e-54 216.5 280 41.8
Lj6g0026739 Lotus japonicus HOM05D000113 ORTHO05D005496 4.0e-54 216.1 274 43.4
ECA246G2046 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.3e-54 215.7 275 44.4
Glyma.11G242300 Glycine max HOM05D000113 ORTHO05D005496 5.3e-54 215.7 277 42.6
RcHm_v2.0_Chr2g0112281 Rosa chinensis HOM05D000113 ORTHO05D005496 5.3e-54 215.7 278 41.7
TWI77G0223 Tripterygium wilfordii HOM05D000113 ORTHO05D005496 5.3e-54 215.7 273 45.1
Actinidia00284 Actinidia chinensis HOM05D000113 ORTHO05D005496 6.9e-54 215.3 280 42.9
Migut.H02323 Erythranthe guttata HOM05D000113 ORTHO05D005496 1.2e-53 214.5 275 42.2
FAN26G3479 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.2e-53 214.5 279 42.3
Prupe.6G193800 Prunus persica HOM05D000113 ORTHO05D005496 1.5e-53 214.2 277 41.5
Dinv24167 Davidia involucrata HOM05D000113 ORTHO05D005496 2.0e-53 213.8 280 43.2
Lalb_Chr08g0230951 Lupinus albus HOM05D000113 ORTHO05D005496 4.4e-53 212.6 293 44.0
Lj5g0010678 Lotus japonicus HOM05D000113 ORTHO05D005496 5.8e-53 212.2 274 42.7
Manes.10G103500 Manihot esculenta HOM05D000113 ORTHO05D005496 5.8e-53 212.2 281 43.1
FvH4_1g20200 Fragaria vesca HOM05D000113 ORTHO05D005496 7.6e-53 211.8 279 41.9
Potri.017G050100 Populus trichocarpa HOM05D000113 ORTHO05D005496 7.6e-53 211.8 281 43.4
MBI02_g10702_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 9.9e-53 211.5 287 42.5
Psat1g084000 Pisum sativum HOM05D000113 ORTHO05D005496 9.9e-53 211.5 274 42.7
Sabra17G0036700 Salix brachista HOM05D000113 ORTHO05D005496 9.9e-53 211.5 293 42.7
Sabra17G0042100 Salix brachista HOM05D000113 ORTHO05D005496 9.9e-53 211.5 293 42.7
Nitab4.5_0005401g0050 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.3e-52 211.1 221 53.4
Aqoxy4G02794 Aquilegia oxysepala HOM05D000113 ORTHO05D005496 2.2e-52 210.3 275 42.5
FAN19G2146 Fragaria x ananassa HOM05D000113 ORTHO05D005496 2.2e-52 210.3 279 41.6
FAN28G1056 Fragaria x ananassa HOM05D000113 ORTHO05D005496 2.2e-52 210.3 279 41.6
Os07g0621500 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D005496 2.9e-52 209.9 278 39.6
FAN23G0752 Fragaria x ananassa HOM05D000113 ORTHO05D005496 4.9e-52 209.1 279 41.2
PSO761G0046 Papaver somniferum HOM05D000113 ORTHO05D005496 4.9e-52 209.1 274 40.5
Medtr3g086770 Medicago truncatula HOM05D000113 ORTHO05D005496 8.4e-52 208.4 274 42.0
Sc03g0000190 Simmondsia chinensis HOM05D000113 ORTHO05D005496 1.1e-51 208.0 275 43.6
PGR102G0466 Punica granatum HOM05D000113 ORTHO05D005496 1.4e-51 207.6 279 40.5
PSO700G0222 Papaver somniferum HOM05D000113 ORTHO05D005496 1.9e-51 207.2 274 40.5
SalBow1G6336 Salvia bowleyana HOM05D000113 ORTHO05D005496 7.1e-51 205.3 277 40.1
TPR.G1396 Trifolium pratense HOM05D000113 ORTHO05D005496 7.1e-51 205.3 283 41.7
Lalb_Chr23g0277561 Lupinus albus HOM05D000113 ORTHO05D005496 9.3e-51 204.9 274 43.8
Sed0023847 Sechium edule HOM05D000113 ORTHO05D005496 1.2e-50 204.5 286 43.0
Ca_16506_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 4.6e-50 202.6 274 41.2
Ca_30638_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 4.6e-50 202.6 274 41.2
ClCG10G008390 Citrullus lanatus HOM05D000113 ORTHO05D005496 1.7e-49 200.7 278 40.3
Ah.02g126230 Amaranthus hybridus HOM05D000113 ORTHO05D005496 3.0e-49 199.9 285 39.6
TPR.G30542 Trifolium pratense HOM05D000113 ORTHO05D005496 3.9e-49 199.5 274 40.9
MELO3C018998.2 Cucumis melo HOM05D000113 ORTHO05D005496 8.7e-49 198.4 278 40.6
CsaV3_4G009030 Cucumis sativus L. HOM05D000113 ORTHO05D005496 1.9e-48 197.2 278 39.6
HanXRQChr15g0469421 Helianthus annuus HOM05D000113 ORTHO05D005496 7.3e-48 195.3 273 41.0
ATR0807G003 Amborella trichopoda HOM05D000113 ORTHO05D005496 1.3e-47 194.5 289 39.8
THA.LOC104798664 Tarenaya hassleriana HOM05D000113 ORTHO05D005496 1.1e-46 191.4 282 39.4
CDE10G0712 Ceratophyllum demersum HOM05D000113 ORTHO05D005496 2.4e-46 190.3 267 38.6
AL6G20870 Arabidopsis lyrata HOM05D000113 ORTHO05D005496 5.3e-46 189.1 275 38.9
AT4G01020 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 1.3e-44 184.5 285 37.2
A03p04500 Brassica napus HOM05D000113 ORTHO05D005496 1.3e-44 184.5 274 39.1
BcaB01g05540 Brassica carinata HOM05D000113 ORTHO05D005496 2.2e-44 183.7 274 38.3
HPP92_010964 Vanilla planifolia HOM05D000113 ORTHO05D005496 2.2e-44 183.7 267 37.1
C03p05000 Brassica napus HOM05D000113 ORTHO05D005496 2.9e-44 183.3 274 38.0
BraA03t09794Z Brassica rapa HOM05D000113 ORTHO05D005496 2.9e-44 183.3 274 38.7
Medtr1g037750 Medicago truncatula HOM05D000113 ORTHO05D005496 2.9e-44 183.3 280 38.6
AT5G10370 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 3.8e-44 183.0 283 37.5
BolC3t13030H Brassica oleracea HOM05D000113 ORTHO05D005496 3.8e-44 183.0 274 38.7
Aa31LG3G16810 Aethionema arabicum HOM05D000113 ORTHO05D005496 6.4e-44 182.2 283 37.5
Medtr3g014030 Medicago truncatula HOM05D000113 ORTHO05D005496 8.4e-44 181.8 275 38.9
Sp6g33080 Schrenkiella parvula HOM05D000113 ORTHO05D005496 1.4e-43 181.0 275 38.5
unitig_899.g14557 Utricularia gibba HOM05D000113 ORTHO05D005496 2.4e-43 180.3 278 39.2
BcaB08g37113 Brassica carinata HOM05D000113 ORTHO05D005496 1.6e-42 177.6 274 37.6
Carub.0006s0884 Capsella rubella HOM05D000113 ORTHO05D005496 1.6e-42 177.6 274 36.5
BcaB06g26892 Brassica carinata HOM05D000113 ORTHO05D005496 2.7e-42 176.8 276 37.7
A10p27230 Brassica napus HOM05D000113 ORTHO05D005496 3.5e-42 176.4 272 39.7
BcaB06g26902 Brassica carinata HOM05D000113 ORTHO05D005496 4.6e-42 176.0 276 37.7
C09p67040 Brassica napus HOM05D000113 ORTHO05D005496 7.9e-42 175.3 277 38.6
BolC9t59477H Brassica oleracea HOM05D000113 ORTHO05D005496 2.3e-41 173.7 277 38.3
Thhalv10012419m.g Eutrema salsugineum HOM05D000113 ORTHO05D005496 2.3e-41 173.7 274 37.6
vmacro12989 Vaccinium macrocarpon HOM05D000113 ORTHO05D005496 3.0e-41 173.3 256 42.2
CARHR202930 Cardamine hirsuta HOM05D000113 ORTHO05D005496 3.9e-41 172.9 275 36.7
BcaC04g19309 Brassica carinata HOM05D000113 ORTHO05D005496 8.7e-41 171.8 277 37.9
BraA10t44773Z Brassica rapa HOM05D000113 ORTHO05D005496 1.5e-40 171.0 272 37.9
SEGI_02546 Sequoiadendron giganteum HOM05D000113 ORTHO05D005496 2.4e-38 163.7 279 34.1
Mapoly0046s0024 Marchantia polymorpha HOM05D000113 ORTHO05D005496 1.3e-23 114.8 282 29.4
Oeu008640.1 Olea europaea HOM05D000113 ORTHO05D005496 2.8e-23 113.6 98 55.1
Sed0005908 Sechium edule HOM05D000113 ORTHO05D005496 3.6e-18 96.7 90 51.1
Actinidia24008 Actinidia chinensis HOM05D000113 ORTHO05D021107 1.1e-08 65.1 61 50.8
Potri.001G310200 Populus trichocarpa HOM05D000113 ORTHO05D332511 6.3e-07 59.3 81 35.8


User provided reference genes

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