Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 2.5e-40 168.3 83 100.0
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 6.5e-25 117.1 86 73.3
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 6.5e-25 117.1 86 73.3
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 1.5e-24 115.9 86 72.1
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 2.5e-24 115.2 86 72.1
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 2.5e-24 115.2 86 70.9
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 4.2e-24 114.4 86 70.9
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 9.4e-24 113.2 84 71.4
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 9.4e-24 113.2 84 71.4
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.6e-23 112.5 85 69.4
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 2.3e-22 108.6 85 67.1
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 1.5e-21 105.9 86 65.1
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.3e-20 102.8 84 67.9
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 1.7e-20 102.4 82 67.1
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.2e-20 102.1 84 66.7
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 6.3e-20 100.5 86 62.8
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 3.1e-19 98.2 84 65.5
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 3.1e-19 98.2 82 64.6
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 9.1e-19 96.7 82 64.6
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 1.3e-17 92.8 86 61.6
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 2.2e-17 92.0 81 59.3
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 3.8e-17 91.3 83 56.6
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 5.0e-17 90.9 81 63.0
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.1e-16 89.7 81 56.8
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 1.9e-16 89.0 81 58.0
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 1.9e-16 89.0 85 56.5
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.2e-16 87.8 80 57.5
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 5.5e-16 87.4 81 56.8
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 5.5e-16 87.4 83 53.0
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 9.4e-16 86.7 81 56.8
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 9.4e-16 86.7 85 56.5
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 9.4e-16 86.7 85 56.5
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 1.6e-15 85.9 81 54.3
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 1.6e-15 85.9 83 55.4
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 2.1e-15 85.5 81 54.3
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 2.1e-15 85.5 81 53.1
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 2.1e-15 85.5 81 55.6
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 2.1e-15 85.5 85 55.3
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 2.1e-15 85.5 85 56.5
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 2.7e-15 85.1 81 54.3
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 2.7e-15 85.1 81 55.6
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.7e-15 85.1 83 56.6
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 2.7e-15 85.1 83 56.6
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 2.7e-15 85.1 81 54.3
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 2.7e-15 85.1 81 54.3
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 3.6e-15 84.7 83 54.2
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 3.6e-15 84.7 81 54.3
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.7e-15 84.3 80 55.0
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 4.7e-15 84.3 81 56.8
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 4.7e-15 84.3 81 55.6
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 4.7e-15 84.3 84 54.8
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 4.7e-15 84.3 82 54.9
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 4.7e-15 84.3 81 53.1
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 6.1e-15 84.0 81 53.1
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 8.0e-15 83.6 81 54.3
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 8.0e-15 83.6 81 55.6
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 8.0e-15 83.6 80 52.5
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 1.0e-14 83.2 81 54.3
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 1.0e-14 83.2 78 55.1
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 1.0e-14 83.2 81 54.3
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 1.4e-14 82.8 81 51.9
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.4e-14 82.8 81 51.9
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 1.4e-14 82.8 81 55.6
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 1.4e-14 82.8 81 53.1
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 1.4e-14 82.8 81 54.3
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 1.4e-14 82.8 82 53.7
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.8e-14 82.4 84 53.6
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-14 82.0 78 53.8
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-14 82.0 78 53.8
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 2.3e-14 82.0 83 50.6
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 2.3e-14 82.0 82 53.7
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 2.3e-14 82.0 82 53.7
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.3e-14 82.0 79 53.2
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.3e-14 82.0 84 54.8
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 4.0e-14 81.3 81 50.6
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 5.2e-14 80.9 85 49.4
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 5.2e-14 80.9 69 60.9
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 5.2e-14 80.9 81 51.9
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 5.2e-14 80.9 81 51.9
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.2e-14 80.9 82 53.7
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.2e-14 80.9 82 53.7
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.2e-13 79.7 83 53.0
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.2e-13 79.7 81 53.1
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 1.5e-13 79.3 80 48.8
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 2.0e-13 79.0 79 51.9
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 2.0e-13 79.0 81 49.4
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 2.6e-13 78.6 81 51.9
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 2.6e-13 78.6 83 51.8
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 2.6e-13 78.6 81 49.4
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 3.4e-13 78.2 81 53.1
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 3.4e-13 78.2 81 53.1
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 3.4e-13 78.2 81 48.1
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 4.4e-13 77.8 81 53.1
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 9.8e-13 76.6 81 51.9
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 9.8e-13 76.6 80 46.2
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 2.8e-12 75.1 83 45.8
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 2.8e-12 75.1 81 51.9
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.1e-11 73.2 74 52.7
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 1.4e-11 72.8 81 48.1
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 4.1e-11 71.2 76 50.0
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 1.2e-10 69.7 78 48.7
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.2e-10 69.7 78 48.7
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.0e-09 66.6 78 46.2
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 4.2e-08 61.2 81 43.2
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 9.4e-08 60.1 81 42.0
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.6e-07 59.3 83 39.8
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 5.2e-06 54.3 83 37.3
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 5.2e-06 54.3 55 50.9


User provided reference genes

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