Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G4350 Aethionema arabicum HOM05D057780 ORTHO05D001100 7.5e-92 340.5 171 100.0
Aa31LG3G2540 Aethionema arabicum HOM05D001201 ORTHO05D001100 3.8e-35 152.1 149 57.7
Aa31LG9G4700 Aethionema arabicum HOM05D057780 ORTHO05D059325 1.5e-31 140.2 88 81.8
Thhalv10019961m.g Eutrema salsugineum HOM05D001201 ORTHO05D001100 1.3e-08 63.9 46 65.2
Aa31LG7G15450 Aethionema arabicum HOM05D001201 ORTHO05D001100 3.0e-08 62.8 32 90.6
Nitab4.5_0000132g0200 Nicotiana tabacum HOM05D001201 ORTHO05D001100 4.3e-07 58.9 46 60.9
Nitab4.5_0005311g0020 Nicotiana tabacum HOM05D001201 ORTHO05D001100 4.3e-07 58.9 46 60.9
Actinidia31293 Actinidia chinensis HOM05D001201 ORTHO05D001100 5.7e-07 58.5 47 61.7
MSTRG.19228 Avicennia marina HOM05D001201 ORTHO05D001100 5.7e-07 58.5 46 60.9
Migut.J00987 Erythranthe guttata HOM05D001201 ORTHO05D001100 5.7e-07 58.5 46 60.9
CAN.G1138.12 Capsicum annuum HOM05D001201 ORTHO05D001100 9.7e-07 57.8 46 58.7
Lj5g0006180 Lotus japonicus HOM05D001201 ORTHO05D001100 9.7e-07 57.8 61 47.5
Solyc10g083630.2 Solanum lycopersicum HOM05D001201 ORTHO05D001100 9.7e-07 57.8 46 58.7
Sopen10g033100 Solanum pennellii HOM05D001201 ORTHO05D001100 9.7e-07 57.8 46 58.7
Actinidia33950 Actinidia chinensis HOM05D001201 ORTHO05D001100 1.6e-06 57.0 88 37.5
AL3G21300 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.6e-06 57.0 46 58.7
AT3G10010 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 1.6e-06 57.0 46 58.7
Carub.0003s0911 Capsella rubella HOM05D001201 ORTHO05D001100 1.6e-06 57.0 46 58.7
CARHR208710 Cardamine hirsuta HOM05D001201 ORTHO05D001100 1.6e-06 57.0 46 60.9
Ciclev10030474m.g Citrus clementina HOM05D001201 ORTHO05D001100 1.6e-06 57.0 124 33.9
Duzib093G0950 Durio zibethinus HOM05D001201 ORTHO05D001100 1.6e-06 57.0 46 60.9
AT5G04560 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
CSS0012668 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
CAN.G824.27 Capsicum annuum HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
FvH4_3g04410 Fragaria vesca HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
FAN11G1782 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
FAN16G0828 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
FAN21G3547 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
Gohir.A09G136700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
Gorai.006G158300 Gossypium raimondii HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
Peaxi162Scf00433g00067 Petunia axillaris HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
Prupe.7G118000 Prunus persica HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
Rhsim04G0135900 Rhododendron simsii HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
Solyc09g009080.4 Solanum lycopersicum HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
Sopen09g003780 Solanum pennellii HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
PGSC0003DMG400002719 Solanum tuberosum HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 58.7
Thecc.05G080600 Theobroma cacao HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
vmacro08815 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
GSVIVG01034713001 Vitis vinifera HOM05D001201 ORTHO05D001100 2.2e-06 56.6 46 60.9
Atru.chr8.1639 Acer truncatum HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
BcaB08g35661 Brassica carinata HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 60.9
A10p31520 Brassica napus HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 60.9
BraA10t45198Z Brassica rapa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 60.9
Carub.0006s0350 Capsella rubella HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 60.9
Eucgr.A01547 Eucalyptus grandis HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FvH4_6g17860 Fragaria vesca HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FAN02G1301 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FAN05G3005 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FAN05G4586 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FAN09G1539 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
FAN14G4458 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
Lalb_Chr01g0018331 Lupinus albus HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
Oeu059852.1 Olea europaea HOM05D001201 ORTHO05D001100 2.8e-06 56.2 39 61.5
PGR004G0133 Punica granatum HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
RcHm_v2.0_Chr3g0472091 Rosa chinensis HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 58.7
THA.LOC104816454 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 2.8e-06 56.2 46 60.9
CAN.G135.68 Capsicum annuum HOM05D001201 ORTHO05D001100 3.7e-06 55.8 41 65.9
Gohir.A04G066400 Gossypium hirsutum HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 58.7
Gohir.D04G104500 Gossypium hirsutum HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 58.7
Gorai.009G408300 Gossypium raimondii HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 58.7
Nitab4.5_0001807g0090 Nicotiana tabacum HOM05D001201 ORTHO05D001100 3.7e-06 55.8 41 65.9
Os01g0218032 Oryza sativa ssp. japonica HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 58.7
Peaxi162Scf00110g01921 Petunia axillaris HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 56.5
Sp6g38200 Schrenkiella parvula HOM05D001201 ORTHO05D001100 3.7e-06 55.8 70 47.1
Zm00001eb289030 Zea mays HOM05D001201 ORTHO05D001100 3.7e-06 55.8 46 58.7
AUR62002762 Chenopodium quinoa HOM05D001201 ORTHO05D001100 4.8e-06 55.5 46 58.7
Gohir.D09G137800 Gossypium hirsutum HOM05D001201 ORTHO05D001100 4.8e-06 55.5 46 58.7
Lalb_Chr02g0151321 Lupinus albus HOM05D001201 ORTHO05D001100 4.8e-06 55.5 48 60.4
MD11G1157400 Malus domestica HOM05D001201 ORTHO05D001100 4.8e-06 55.5 41 58.5
Oeu032421.3 Olea europaea HOM05D001201 ORTHO05D001100 4.8e-06 55.5 46 58.7
Oeu040537.2 Olea europaea HOM05D001201 ORTHO05D001100 4.8e-06 55.5 46 58.7
Os05g0445900 Oryza sativa ssp. japonica HOM05D001201 ORTHO05D001100 4.8e-06 55.5 30 80.0
vmacro07365 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 4.8e-06 55.5 46 58.7
Aa31LG5G21680 Aethionema arabicum HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
AL4G32670 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
AL4G32680 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
AT2G36490 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
BcaB02g09350 Brassica carinata HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
BcaC02g11765 Brassica carinata HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
A05p09310 Brassica napus HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
C04p11600 Brassica napus HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
BolC4t22808H Brassica oleracea HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
BraA05t19888Z Brassica rapa HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Carub.0004s1830 Capsella rubella HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Carub.0004s1831 Capsella rubella HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
CARHR130800 Cardamine hirsuta HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Cc06_g05230 Coffea canephora HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
COL.COLO4_29819 Corchorus olitorius HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Thhalv10016139m.g Eutrema salsugineum HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Glyma.03G190800 Glycine max HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 58.7
MD14G1015300 Malus domestica HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Oeu040540.1 Olea europaea HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 58.7
SalBow3G3680 Salvia bowleyana HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 58.7
Sp4g18800 Schrenkiella parvula HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
Solyc11g007580.3 Solanum lycopersicum HOM05D001201 ORTHO05D001100 6.3e-06 55.1 101 35.6
Sopen11g003420 Solanum pennellii HOM05D001201 ORTHO05D001100 6.3e-06 55.1 101 35.6
THA.LOC104816669 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 58.7
THA.LOC104827483 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
unitig_27.g25399 Utricularia gibba HOM05D001201 ORTHO05D001100 6.3e-06 55.1 46 56.5
AL6G14210 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 8.2e-06 54.7 70 45.7
BcaC06g32166 Brassica carinata HOM05D001201 ORTHO05D001100 8.2e-06 54.7 66 50.0
C09p72210 Brassica napus HOM05D001201 ORTHO05D001100 8.2e-06 54.7 66 50.0
BolC9t59965H Brassica oleracea HOM05D001201 ORTHO05D001100 8.2e-06 54.7 66 50.0
CDE09G0105 Ceratophyllum demersum HOM05D001201 ORTHO05D001100 8.2e-06 54.7 31 74.2
Lj3A932G50 Lonicera japonica HOM05D001201 ORTHO05D001100 8.2e-06 54.7 103 35.9
MD12G1017600 Malus domestica HOM05D001201 ORTHO05D001100 8.2e-06 54.7 46 56.5
Peaxi162Scf00244g00044 Petunia axillaris HOM05D001201 ORTHO05D001100 8.2e-06 54.7 41 63.4
Potri.006G116000 Populus trichocarpa HOM05D001201 ORTHO05D001100 8.2e-06 54.7 30 80.0
QL03p004227 Quercus lobata HOM05D001201 ORTHO05D001100 8.2e-06 54.7 46 54.3
Rhsim13G0105000 Rhododendron simsii HOM05D001201 ORTHO05D001100 8.2e-06 54.7 46 56.5
SalBow5G0882 Salvia bowleyana HOM05D001201 ORTHO05D001100 8.2e-06 54.7 41 53.7
SGA_v2.0_scaffold40G15408 Striga asiatica HOM05D001201 ORTHO05D001100 8.2e-06 54.7 31 74.2


User provided reference genes

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