Gene: Carub.0004s1830

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0004s1830
  • Transcript Identifier Carub.0004s1830.1
  • Gene Type Coding gene
  • Location scaffold_4 : 10279083-10285896 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0004s1830.v1.1
  • pacid 39238941
  • synonym Carubv10025379m.g

Descriptions

  • Description PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080111
IEA
InterProDNA demethylation
GO:0006284
IEA
InterProbase-excision repair
GO:0006281
IEA
InterProDNA repair
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc09g009080.4
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation Solyc09g009080.4
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc09g009080.4
GO:0048229
ISO
PLAZA Integrative Orthologygametophyte development Os01g0218032

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0003824
IEA
InterProcatalytic activity
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity Os05g0445900

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044811 DNA glycosylase, plant
IPR003265 HhH-GPD domain
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR028924 Permuted single zf-CXXC unit
IPR028925 Demeter, RRM-fold domain
IPR011257 DNA glycosylase
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)
14.5.4 DNA damage response.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)