Gene: FAN14G4458

General Information

Structural Information

  • Species Fragaria x ananassa
  • Gene Identifier FAN14G4458
  • Transcript Identifier FAN14G4458.1
  • Gene Type Coding gene
  • Location Fvb6-1 : 24730185-24739334 : positive

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id maker-Fvb6-1-snap-gene-247.41.v1.0.a1
  • pacid 50524264

Descriptions

  • Description PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation Solyc09g009080.4
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G36490
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing AT2G36490
GO:0048229
ISO
PLAZA Integrative Orthologygametophyte development Os01g0218032
GO:0031936
ISO
PLAZA Integrative Orthologynegative regulation of chromatin silencing AT2G36490
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc09g009080.4
GO:0006284
IEA
InterProbase-excision repair
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc09g009080.4
GO:0006281
IEA
InterProDNA repair
GO:0080111
IEA
InterProDNA demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity Os05g0445900
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G36490
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G36490
GO:0003824
IEA
InterProcatalytic activity
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0035514
IEA
InterProDNA demethylase activity
GO:0019104
IEA
InterProDNA N-glycosylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G36490

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR028924 Permuted single zf-CXXC unit
IPR003265 HhH-GPD domain
IPR028925 Demeter, RRM-fold domain
IPR044811 DNA glycosylase, plant
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR011257 DNA glycosylase
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)