Gene: Os05g0445900

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0445900
  • Transcript Identifier Os05t0445900-01
  • Gene Type Coding gene
  • Location chr05 : 21843770-21855940 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0445900-01
  • MSU-ID LOC_Os05g37350.1
  • symbol ROS1c
  • symbol DNG701
  • name DNA glycosylase/lyase 701
  • name REPRESSOR OF SILENCING 1c
  • uniprot B8YIE8

Descriptions

  • Description 5-methylcytosine DNA glycosylase/lyase, Demethylation of retrotransposon Tos17, Promotion of Tos17 transposition, Seed development
  • Description 5-methylcytosine DNA glycosylase/lyase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing AT2G36490
GO:0080111
IDA
IEA
GOA DatabaseDNA demethylation
GO:0080111
IEA
InterProDNA demethylation
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc09g009080.4
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G04560
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT5G04560
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation Solyc09g009080.4
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc09g009080.4
GO:0031936
ISO
PLAZA Integrative Orthologynegative regulation of chromatin silencing AT2G36490
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G36490
GO:0006284
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0019104
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0035514
IEA
GOA DatabaseDNA demethylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G36490
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G36490
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016829
IEA
GOA Databaselyase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0051747
IMP
GOA Databasecytosine C-5 DNA demethylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043078
ISO
PLAZA Integrative Orthologypolar nucleus AT5G04560
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003265 HhH-GPD domain
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR011257 DNA glycosylase
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR028925 Demeter, RRM-fold domain
IPR044811 DNA glycosylase, plant
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)
14.5.4 DNA damage response.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)