Gene: Solyc11g007580.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g007580.3
- Transcript Identifier Solyc11g007580.3.1
- Gene Type Coding gene
- Location SL4.0ch11 : 1850036-1859057 : negative
Gene Family Information
- ID HOM05D001201
- #Genes/#Species 520/96
- Phylogenetic origin
- ID ORTHO05D001100
- #Genes/#Species 487/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc11g007580.3.1
- uniprot A0A3Q7IPX5
- gene_id Solyc11g007580
Descriptions
- Description DNA demethylase 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT4G34060 |
| GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT4G34060 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G04560 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT5G04560 |
| GO:0006349 | ISO | PLAZA Integrative Orthology | regulation of gene expression by genetic imprinting | AT5G04560 |
| GO:0006284 | IEA | GOA Database | base-excision repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0080111 | IEA | GOA Database | DNA demethylation | |
| GO:0080111 | IEA | InterPro | DNA demethylation | |
| GO:0010154 | IDA | Gene Ontology | fruit development | 1 |
| GO:0009836 | IDA | Gene Ontology | fruit ripening, climacteric | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051539 | IEA | GOA Database | 4 iron, 4 sulfur cluster binding | |
| GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
| GO:0051747 | ISO | PLAZA Integrative Orthology | cytosine C-5 DNA demethylase activity | AT4G34060 |
| GO:0003906 | ISO | PLAZA Integrative Orthology | DNA-(apurinic or apyrimidinic site) endonuclease activity | AT5G04560 |
| GO:0035514 | IEA | GOA Database | DNA demethylase activity | |
| GO:0035514 | IDA | Gene Ontology | DNA demethylase activity | 1 |
| GO:0035514 | IEA | InterPro | DNA demethylase activity | |
| GO:0019104 | IEA | GOA Database | DNA N-glycosylase activity | |
| GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043078 | ISO | PLAZA Integrative Orthology | polar nucleus | AT5G04560 |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR028925 | Demeter, RRM-fold domain |
| IPR011257 | DNA glycosylase |
| IPR044811 | DNA glycosylase, plant |
| IPR003651 | Endonuclease III-like, iron-sulphur cluster loop motif |
| IPR003265 | HhH-GPD domain |
| IPR028924 | Permuted single zf-CXXC unit |
| IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal |
| Mapman id | Description |
|---|---|
| 12.5.3.1 | Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1) |