Gene: Nitab4.5_0005311g0020
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0005311g0020
- Transcript Identifier Nitab4.5_0005311g0020.1
- Gene Type Coding gene
- Location Nitab4.5_0005311 : 64587-73903 : negative
Gene Family Information
- ID HOM05D001201
- #Genes/#Species 520/96
- Phylogenetic origin
- ID ORTHO05D001100
- #Genes/#Species 487/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0005311g0020.1
- SR1-identifier Nta23g16480.1
Descriptions
- Description HhH-GPD domain, DNA glycosylase, Endonuclease III-like, iron-sulphur cluster loop motif, Helix-turn-helix, base-excision DNA repair, C-terminal
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | Solyc10g083630.2 |
GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT2G36490 |
GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT4G34060 |
GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | AT2G36490 |
GO:0048229 | ISO | PLAZA Integrative Orthology | gametophyte development | Os01g0218032 |
GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT4G34060 |
GO:0031936 | ISO | PLAZA Integrative Orthology | negative regulation of chromatin silencing | AT2G36490 |
GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc10g083630.2 |
GO:0080111 | IEA | InterPro | DNA demethylation | |
GO:0006281 | IEA | InterPro | DNA repair | |
GO:0006284 | IEA | InterPro | base-excision repair |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0051747 | ISO | PLAZA Integrative Orthology | cytosine C-5 DNA demethylase activity | AT4G34060 |
GO:0003906 | ISO | PLAZA Integrative Orthology | DNA-(apurinic or apyrimidinic site) endonuclease activity | AT2G36490 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G36490 |
GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
GO:0035514 | IEA | InterPro | DNA demethylase activity | |
GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
GO:0003824 | IEA | InterPro | catalytic activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G36490 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR003651 | Endonuclease III-like, iron-sulphur cluster loop motif |
IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal |
IPR003265 | HhH-GPD domain |
IPR028925 | Demeter, RRM-fold domain |
IPR011257 | DNA glycosylase |
IPR028924 | Permuted single zf-CXXC unit |
IPR044811 | DNA glycosylase, plant |