Gene: Sopen10g033100
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g033100
- Transcript Identifier Sopen10g033100.1
- Gene Type Coding gene
- Location Spenn-ch10 : 80315660-80325186 : negative
Gene Family Information
- ID HOM05D001201
- #Genes/#Species 520/96
- Phylogenetic origin
- ID ORTHO05D001100
- #Genes/#Species 487/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g033100.1
Descriptions
- Description Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | Solyc10g083630.2 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT2G36490 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT4G34060 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | AT2G36490 |
| GO:0048229 | ISO | PLAZA Integrative Orthology | gametophyte development | Os01g0218032 |
| GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT4G34060 |
| GO:0031936 | ISO | PLAZA Integrative Orthology | negative regulation of chromatin silencing | AT2G36490 |
| GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc10g083630.2 |
| GO:0080111 | IEA | InterPro | DNA demethylation | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051747 | ISO | PLAZA Integrative Orthology | cytosine C-5 DNA demethylase activity | AT4G34060 |
| GO:0003906 | ISO | PLAZA Integrative Orthology | DNA-(apurinic or apyrimidinic site) endonuclease activity | AT2G36490 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G36490 |
| GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
| GO:0035514 | IEA | InterPro | DNA demethylase activity | |
| GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
| GO:0003824 | IEA | InterPro | catalytic activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G36490 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003651 | Endonuclease III-like, iron-sulphur cluster loop motif |
| IPR011257 | DNA glycosylase |
| IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal |
| IPR028925 | Demeter, RRM-fold domain |
| IPR003265 | HhH-GPD domain |
| IPR044811 | DNA glycosylase, plant |
| IPR028924 | Permuted single zf-CXXC unit |