Gene: Sopen11g003420

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g003420
  • Transcript Identifier Sopen11g003420.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 1918190-1927222 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g003420.1

Descriptions

  • Description Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT5G04560
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G04560
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT5G04560
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc11g007580.3
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc11g007580.3
GO:0006281
IEA
InterProDNA repair
GO:0006284
IEA
InterProbase-excision repair
GO:0080111
IEA
InterProDNA demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT5G04560
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0003824
IEA
InterProcatalytic activity
GO:0035514
IEA
InterProDNA demethylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043078
ISO
PLAZA Integrative Orthologypolar nucleus AT5G04560
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G34060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR044811 DNA glycosylase, plant
IPR028925 Demeter, RRM-fold domain
IPR003265 HhH-GPD domain
IPR011257 DNA glycosylase
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR028924 Permuted single zf-CXXC unit
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)