Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 3.2e-147 525.0 256 100.0
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 7.6e-141 503.8 250 98.8
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 4.2e-139 498.0 250 97.6
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 2.7e-138 495.4 250 96.4
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 6.7e-137 490.7 250 96.0
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 1.3e-135 486.5 250 95.2
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 1.6e-135 486.1 250 95.6
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 1.1e-134 483.4 250 95.2
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 1.1e-134 483.4 250 95.2
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 1.4e-134 483.0 250 94.8
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 1.4e-134 483.0 250 94.4
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 1.4e-134 483.0 250 94.4
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 3.1e-134 481.9 250 94.0
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 3.1e-134 481.9 250 94.0
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 4.1e-134 481.5 250 94.8
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 2.6e-133 478.8 250 92.8
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 7.6e-133 477.2 250 93.6
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 1.7e-132 476.1 250 93.6
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 1.3e-124 449.9 250 90.0
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 1.2e-122 443.4 250 88.8
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 2.0e-120 436.0 256 84.8
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 1.7e-116 422.9 277 77.6
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 4.8e-111 404.8 254 80.3
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 6.3e-111 404.4 254 79.1
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 1.4e-110 403.3 273 75.5
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 1.4e-110 403.3 260 77.7
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 1.4e-110 403.3 263 77.2
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 1.4e-110 403.3 250 79.6
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 1.4e-110 403.3 250 79.6
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 3.1e-110 402.1 260 77.7
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 3.1e-110 402.1 260 77.7
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 4.1e-110 401.7 277 74.4
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 4.1e-110 401.7 254 78.7
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 9.1e-110 400.6 250 79.2
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 9.1e-110 400.6 275 74.9
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 9.1e-110 400.6 277 73.3
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 1.2e-109 400.2 267 76.0
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 1.2e-109 400.2 272 74.3
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.2e-109 400.2 275 74.5
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 1.2e-109 400.2 275 74.5
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 1.6e-109 399.8 277 73.3
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 2.0e-109 399.4 275 73.8
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 2.6e-109 399.1 267 75.3
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 3.5e-109 398.7 277 73.6
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 4.5e-109 398.3 277 73.6
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 4.5e-109 398.3 270 74.8
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 4.5e-109 398.3 267 75.3
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 5.9e-109 397.9 271 74.9
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 7.7e-109 397.5 276 73.6
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 7.7e-109 397.5 274 74.1
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 7.7e-109 397.5 270 74.8
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 7.7e-109 397.5 275 73.8
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 1.0e-108 397.1 276 74.3
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 1.0e-108 397.1 266 76.3
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 1.3e-108 396.7 270 74.4
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 1.7e-108 396.4 267 74.9
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 2.9e-108 395.6 276 73.6
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 2.9e-108 395.6 270 74.1
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 3.8e-108 395.2 252 78.2
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.8e-108 395.2 259 76.8
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 3.8e-108 395.2 259 76.8
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 5.0e-108 394.8 277 72.6
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 6.5e-108 394.4 270 73.7
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 6.5e-108 394.4 276 72.5
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 8.5e-108 394.0 277 73.3
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 8.5e-108 394.0 277 73.3
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 8.5e-108 394.0 271 74.2
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 8.5e-108 394.0 275 73.8
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 8.5e-108 394.0 276 73.2
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 2.5e-107 392.5 267 74.2
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 2.5e-107 392.5 275 72.7
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.5e-107 392.5 259 76.4
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 2.5e-107 392.5 277 73.3
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 2.5e-107 392.5 274 73.7
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 3.2e-107 392.1 275 73.5
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 3.2e-107 392.1 259 76.4
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 3.2e-107 392.1 271 73.8
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 3.2e-107 392.1 276 72.1
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 5.5e-107 391.3 273 72.9
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 9.4e-107 390.6 276 72.8
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 1.2e-106 390.2 276 71.4
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 2.1e-106 389.4 274 73.4
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 2.7e-106 389.0 266 75.2
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 2.7e-106 389.0 270 73.3
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 2.7e-106 389.0 251 77.3
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 3.6e-106 388.7 269 73.2
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 6.1e-106 387.9 276 73.9
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 6.1e-106 387.9 258 76.0
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 8.0e-106 387.5 277 72.2
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 8.0e-106 387.5 270 72.2
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 8.0e-106 387.5 277 72.9
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 8.0e-106 387.5 275 73.5
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 8.0e-106 387.5 275 73.5
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.8e-105 386.3 277 72.9
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 2.3e-105 386.0 277 72.6
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 2.3e-105 386.0 253 77.5
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 3.0e-105 385.6 277 72.9
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 4.0e-105 385.2 275 72.4
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 8.8e-105 384.0 253 78.7
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.5e-104 383.3 270 71.9
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 2.0e-104 382.9 262 73.3
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 2.6e-104 382.5 277 71.5
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 3.3e-104 382.1 277 72.6
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 9.7e-104 380.6 239 79.1
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 1.7e-103 379.8 272 69.5
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 2.2e-103 379.4 277 70.8
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 4.8e-103 378.3 302 66.6
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 8.2e-103 377.5 276 71.0
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 1.4e-102 376.7 267 71.5
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 3.5e-101 372.1 276 69.9
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 4.5e-101 371.7 275 72.0
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 7.7e-101 370.9 278 70.9
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 5.0e-100 368.2 260 72.3
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 8.5e-100 367.5 253 73.9
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 1.0e-97 360.5 223 79.8
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 3.4e-96 355.5 271 67.9
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 6.3e-95 351.3 276 65.9
Atru.chr1.2450 Acer truncatum HOM05D003820 ORTHO05D004540 1.8e-94 349.7 256 69.5
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 4.1e-94 348.6 252 71.4
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 9.1e-94 347.4 263 69.6
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 9.1e-94 347.4 250 70.4
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 4.5e-93 345.1 265 67.2
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 2.5e-91 339.3 242 71.9
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 4.0e-89 332.0 250 67.6
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 4.0e-89 332.0 248 68.1
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 1.5e-88 330.1 251 68.9
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 2.8e-87 325.9 245 69.4
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 4.9e-87 325.1 239 69.0
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 3.1e-86 322.4 239 68.2
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 5.4e-86 321.6 252 66.3
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 4.5e-85 318.5 252 65.9
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 5.9e-85 318.2 239 67.8
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 4.3e-83 312.0 203 76.8
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.3e-79 300.4 258 60.5
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 1.6e-74 283.5 252 58.3
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 8.0e-74 281.2 186 76.3
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 1.8e-73 280.0 263 54.8
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 5.8e-72 275.0 193 74.6
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.4e-70 270.4 252 59.1
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 1.6e-66 256.9 194 70.6
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.6e-66 255.8 254 52.4
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 5.8e-64 248.4 274 54.4
COL.COLO4_31885 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.7e-63 246.9 234 58.5
Cpa.g.c38821 Carica papaya HOM05D003820 ORTHO05D004540 9.2e-62 241.1 167 74.9
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 4.6e-61 238.8 276 51.1
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.0e-61 238.4 251 54.2
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.0e-61 238.4 251 54.2
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 8.1e-58 228.0 130 85.4
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.1e-57 227.6 130 85.4
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 2.2e-55 219.9 119 88.2
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 8.4e-55 218.0 119 88.2
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.2e-54 216.1 236 48.3
CDE04G2792 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.0e-49 199.1 168 62.5
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 7.6e-48 194.9 222 47.3
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 3.9e-44 182.6 256 39.8
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 1.9e-43 180.3 257 38.1
AUR62030419 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.5e-37 159.5 254 39.4
AUR62003618 Chenopodium quinoa HOM05D003820 ORTHO05D004540 4.8e-34 149.1 131 58.0
CDE07G1892 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 2.5e-30 136.7 93 71.0
Cpa.g.sc109.39 Carica papaya HOM05D003820 ORTHO05D004540 1.6e-29 134.0 85 76.5
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.0e-28 131.3 128 56.2
CSS0046639 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 3.7e-26 122.9 85 70.6
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 8.2e-26 121.7 89 67.4
GSVIVG01037100001 Vitis vinifera HOM05D003820 ORTHO05D004540 2.2e-23 113.6 87 59.8
Oeu051248.1 Olea europaea HOM05D003820 ORTHO05D004540 4.2e-14 82.8 60 68.3
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 1.3e-10 71.2 249 25.3
COL.COLO4_14688 Corchorus olitorius HOM05D000264 ORTHO05D000152 8.2e-10 68.6 83 45.8
A04p27290 Brassica napus HOM05D001091 ORTHO05D001020 3.1e-09 66.6 236 25.8
RcHm_v2.0_Chr4g0397461 Rosa chinensis HOM05D003820 ORTHO05D004540 4.1e-09 66.2 59 57.6
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 9.1e-09 65.1 245 25.3
BraA04t18227Z Brassica rapa HOM05D001091 ORTHO05D001020 9.1e-09 65.1 236 25.8
BraA04t18228Z Brassica rapa HOM05D001091 ORTHO05D001020 2.0e-08 63.9 236 25.4
C04p64820 Brassica napus HOM05D001091 ORTHO05D001020 2.6e-08 63.5 245 25.3
C04p64810 Brassica napus HOM05D001091 ORTHO05D001020 4.5e-08 62.8 245 24.9
vmacro07865 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 7.7e-08 62.0 274 27.0
COL.COLO4_07903 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.3e-07 61.2 39 76.9
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.7e-07 60.8 245 24.9
Dinv07402 Davidia involucrata HOM05D003820 ORTHO05D004540 1.7e-07 60.8 45 68.9
BolC4t27958H Brassica oleracea HOM05D001091 ORTHO05D001020 3.8e-07 59.7 249 24.9
A04p27300 Brassica napus HOM05D001091 ORTHO05D001020 5.5e-06 55.8 253 24.1
CAN.G99.12 Capsicum annuum HOM05D003820 ORTHO05D114897 5.5e-06 55.8 42 61.9


User provided reference genes

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