Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G11610
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G11610 | 1 |  |
| Tree-based ortholog | CRU_001G11610 | 1 | ||
| Anchor point | CRU_007G14740 CRU_002G01920 CRU_008G11580 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G11610 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00032G00240 ATR_00038G01050 ATR_00001G04240 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00001G04240 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL1G12910 | 1 | |
| Tree-based ortholog | 1-to-1 | AL1G12910 | 1 | ||
| Anchor point | many-to-many | AL8G16010 AL7G16710 AL2G02410 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G02410 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT1G12540 | 1 | |
| Tree-based ortholog | 1-to-1 | AT1G12540 | 1 | ||
| Anchor point | many-to-many | AT1G62975 AT4G25400 AT5G51780 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G12540 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-many | BV5G08460 BV0G52910 BV5G22790 ... | 5 | |
| Anchor point | many-to-1 | BV5G08440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BV0G52890 BV0G52900 | 2 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR06G08420 | 1 | |
| Tree-based ortholog | 1-to-1 | BR06G08420 | 1 | ||
| Anchor point | many-to-many | BR03G48510 BR02G16680 BR01G27510 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G08420 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-many | CP00004G01680 CP00004G01710 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00004G01680 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-many | CL01G03130 CL05G08730 CL05G08740 | 3 | |
| Anchor point | many-to-many | CL01G03110 CL05G08730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G03130 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-many | CS00040G00570 CS00031G00070 CS00031G00050 | 3 | |
| Anchor point | many-to-1 | CS00040G00570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00040G00570 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-many | CM00005G05800 CM00006G09680 | 2 | |
| Anchor point | many-to-many | CM00006G09680 CM00005G05800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00005G05800 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-many | EG0005G04590 EG0004G15830 EG0011G01630 ... | 5 | |
| Anchor point | many-to-many | EG0001G24300 EG0004G15830 EG0005G04590 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0011G01630 EG0006G35280 | 2 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-many | FV7G39540 FV5G01380 | 2 | |
| Anchor point | many-to-1 | FV5G01380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G01380 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM16G32620 GM09G27630 GM10G38630 ... | 8 | |
| Anchor point | many-to-many | GM09G27610 GM16G32610 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM16G32610 GM09G27610 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR10G05350 GR02G15710 GR08G08590 ... | 8 | |
| Anchor point | many-to-many | GR08G28230 GR06G19650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR08G28240 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G026820 | 1 | |
| Malus domestica | Tree-based ortholog | 1-to-many | MD07G017440 MD01G018240 MD07G017430 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD01G018240 MD07G017440 | 2 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME01127G01010 ME00341G01400 ME01127G01030 ... | 5 | |
| Anchor point | many-to-many | ME00341G01390 ME01127G01010 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME00341G01400 ME01127G01010 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT00G03420 MT1G102370 MT1G102380 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT00G03400 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00001G01120 | 1 | |
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT01G11340 PT15G13430 PT12G13200 ... | 5 | |
| Anchor point | many-to-many | PT01G11340 PT15G13430 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT12G13200 PT15G13430 | 2 | ||
| Prunus persica | Tree-based ortholog | 1-to-many | PPE_002G27330 PPE_002G27350 PPE_005G09500 | 3 | |
| Anchor point | many-to-1 | PPE_005G09500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G27350 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-many | RC30147G01030 RC30147G01010 RC30147G01020 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30147G01030 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-1 | SL03G006910 | 1 | |
| Anchor point | many-to-1 | SL06G035490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G035490 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-1 | ST03G007100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G007100 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP1G11120 | 1 | |
| Tree-based ortholog | 1-to-1 | TP1G11120 | 1 | ||
| Anchor point | many-to-many | TP6G14000 TP7G23420 TP2G01630 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G11120 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-many | TC0003G26370 TC0003G26360 TC0003G16710 ... | 5 | |
| Anchor point | many-to-1 | TC0003G26360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TC0003G26360 TC0003G26370 | 2 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-many | VV16G02970 VV16G02950 VV16G02960 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV16G02960 VV16G02950 | 2 |