PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.1
Description: protein.degradation.subtilases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_106	3	5	0.000736507
Arabidopsis lyrata	scaffold_7	17	CH_aly_67	3	3	0.000073795
Arabidopsis thaliana	1	17	CH_ath_123	5	6	0.00000000236206
Arabidopsis thaliana	4	17	CH_ath_318	3	3	0.000155492
Arabidopsis thaliana	4	17	CH_ath_109	5	5	0.000000000394196
Arabidopsis thaliana	5	17	CH_ath_57	10	41	0.00000000000000309285
Arabidopsis thaliana	5	18	CH_ath_33	10	41	0.00000000000000309285
Brassica rapa	A02	17	CH_bra_31	5	5	0.00000000047867
Brassica rapa	A03	17	CH_bra_227	4	13	0.000212503
Brassica rapa	A09	17	CH_bra_270	3	4	0.00074308
Capsella rubella	scaffold_1	17	CH_cru_255	3	3	0.000193119
Capsella rubella	scaffold_6	17	CH_cru_37	7	8	0.0000000000000166456
Capsella rubella	scaffold_8	17	CH_cru_111	7	37	0.0000000204846
Chlamydomonas reinhardtii	chromosome_5	17	CH_cre_25	5	23	0.00000109621
Citrus sinensis	scaffold00002	17	CH_csi_207	3	3	0.00035376
Citrus sinensis	scaffold00013	17	CH_csi_124	4	6	0.0000138841
Citrus sinensis	scaffold00026	17	CH_csi_21	6	6	0.00000000000599723
Citrus sinensis	scaffold00040	17	CH_csi_206	3	3	0.00035376
Eucalyptus grandis	scaffold_6	17	CH_egr_639	4	7	0.0000171536
Eucalyptus grandis	scaffold_6	17	CH_egr_503	4	4	0.000000492358
Eucalyptus grandis	scaffold_7	17	CH_egr_197	7	9	0.000000000000111292
Glycine max	Gm04	17	CH_gma_116	5	5	0.0000000034657
Glycine max	Gm06	17	CH_gma_472	3	3	0.00067158
Glycine max	Gm14	17	CH_gma_115	5	5	0.0000000034657
Glycine max	Gm16	17	CH_gma_271	4	5	0.00000764518
Glycine max	Gm18	17	CH_gma_389	4	9	0.000191254
Gossypium raimondii	Chr08	17	CH_gra_295	3	3	0.000225885
Gossypium raimondii	Chr09	17	CH_gra_294	3	3	0.000225885
Gossypium raimondii	Chr10	17	CH_gra_102	5	5	0.000000000696378
Gossypium raimondii	Chr11	17	CH_gra_70	6	6	0.00000000000119479
Malus domestica	10	17	CH_mdo_119	6	35	0.00000319702
Malus domestica	14	17	CH_mdo_29	6	9	0.000000000172418
Malus domestica	15	17	CH_mdo_142	4	7	0.00000893419
Malus domestica	2	17	CH_mdo_20	6	7	0.0000000000144139
Malus domestica	2	17	CH_mdo_260	3	3	0.000315667
Malus domestica	7	17	CH_mdo_97	4	4	0.000000597426
Manihot esculenta	scaffold03942	17	CH_mes_85	4	4	0.00000070794
Manihot esculenta	scaffold04024	17	CH_mes_200	3	3	0.000302478
Manihot esculenta	scaffold06908	17	CH_mes_40	5	5	0.00000000162317
Manihot esculenta	scaffold07088	17	CH_mes_116	5	15	0.00000478167
Manihot esculenta	scaffold10292	17	CH_mes_199	3	3	0.000302478
Oryza sativa ssp. japonica	1	17	CH_osa_149	4	4	0.0000000822831
Oryza sativa ssp. japonica	2	17	CH_osa_161	5	14	0.000000172803
Oryza sativa ssp. japonica	2	17	CH_osa_117	6	23	0.00000000899197
Oryza sativa ssp. japonica	4	17	CH_osa_44	10	79	0.0000000000000876017
Oryza sativa ssp. japonica	4	18	CH_osa_33	10	79	0.0000000000000876017
Populus trichocarpa	Chr01	17	CH_ptr_235	4	4	0.000000873541
Populus trichocarpa	Chr01	17	CH_ptr_428	3	3	0.000411212
Populus trichocarpa	Chr07	17	CH_ptr_427	3	3	0.000411212
Populus trichocarpa	Chr10	17	CH_ptr_234	4	4	0.000000873541
Populus trichocarpa	Chr11	17	CH_ptr_233	4	4	0.000000873541
Populus trichocarpa	Chr14	17	CH_ptr_426	3	3	0.000411212
Prunus persica	scaffold_1	17	CH_ppe_392	3	3	0.000340471
Prunus persica	scaffold_1	17	CH_ppe_219	4	4	0.000000760884
Prunus persica	scaffold_2	17	CH_ppe_218	4	4	0.000000760884
Prunus persica	scaffold_5	17	CH_ppe_20	11	14	4.79288e-23
Prunus persica	scaffold_5	17	CH_ppe_220	4	4	0.000000760884
Prunus persica	scaffold_6	17	CH_ppe_393	3	3	0.000340471
Prunus persica	scaffold_5	18	CH_ppe_18	11	14	4.79288e-23
Ricinus communis	29751	17	CH_rco_44	6	7	0.0000000000797025
Ricinus communis	30068	17	CH_rco_235	3	3	0.000520595
Ricinus communis	30115	17	CH_rco_149	4	5	0.00000739637
Ricinus communis	30143	17	CH_rco_66	5	5	0.00000000415007
Ricinus communis	30170	17	CH_rco_126	4	4	0.00000148267
Ricinus communis	30190	17	CH_rco_22	10	35	0.0000000000000941478
Ricinus communis	30190	18	CH_rco_13	10	35	0.0000000000000941478
Solanum lycopersicum	ch01	17	CH_sly_18	10	12	5.06113e-20
Solanum lycopersicum	ch02	17	CH_sly_213	5	10	0.00000147051
Solanum lycopersicum	ch05	17	CH_sly_468	3	3	0.000780389
Solanum lycopersicum	ch08	17	CH_sly_3	17	18	7.90845e-39
Solanum lycopersicum	ch08	17	CH_sly_34	9	11	1.627e-17
Solanum lycopersicum	ch10	17	CH_sly_220	4	4	0.00000215745
Solanum lycopersicum	ch01	18	CH_sly_17	10	12	5.06113e-20
Solanum lycopersicum	ch08	18	CH_sly_76	10	188	0.00000602718
Solanum lycopersicum	ch08	18	CH_sly_3	17	18	7.90845e-39
Vitis vinifera	chr13	17	CH_vvi_23	13	15	7.16726e-27
Vitis vinifera	chr15	17	CH_vvi_127	6	9	0.00000000258762
Vitis vinifera	chr16	17	CH_vvi_177	6	15	0.000000151688
Vitis vinifera	chr18	17	CH_vvi_443	3	3	0.000952365
Vitis vinifera	chr2	17	CH_vvi_234	4	4	0.00000307892
Vitis vinifera	chr3	17	CH_vvi_442	3	3	0.000952365
Vitis vinifera	chr6	17	CH_vvi_233	4	4	0.00000307892
Vitis vinifera	chrUn	17	CH_vvi_165	5	6	0.0000000588656
Vitis vinifera	chr13	18	CH_vvi_24	13	15	7.16726e-27
Zea mays	7	17	CH_zma_194	3	3	0.00012983

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V