PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.10
Description: misc.cytochrome P450

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_18	6	8	0.0000000086105
Arabidopsis lyrata	scaffold_5	17	CH_aly_2	12	22	1.46701e-18
Arabidopsis lyrata	scaffold_7	17	CH_aly_9	8	14	0.0000000000183947
Arabidopsis lyrata	scaffold_5	18	CH_aly_2	12	22	1.46701e-18
Arabidopsis lyrata	scaffold_7	18	CH_aly_8	11	190	0.0000572018
Arabidopsis thaliana	1	17	CH_ath_125	7	10	0.00000000409403
Arabidopsis thaliana	2	17	CH_ath_278	5	8	0.0000373137
Arabidopsis thaliana	3	17	CH_ath_152	6	7	0.0000000338572
Arabidopsis thaliana	3	17	CH_ath_44	10	11	1.35095e-16
Arabidopsis thaliana	3	17	CH_ath_306	4	4	0.0000941978
Arabidopsis thaliana	3	17	CH_ath_9	18	23	2.12093e-30
Arabidopsis thaliana	3	17	CH_ath_85	8	9	0.00000000000221177
Arabidopsis thaliana	4	17	CH_ath_88	9	14	0.00000000000339723
Arabidopsis thaliana	4	17	CH_ath_107	8	13	0.000000000308356
Arabidopsis thaliana	4	17	CH_ath_307	4	4	0.0000941978
Arabidopsis thaliana	5	17	CH_ath_209	8	32	0.000002234
Arabidopsis thaliana	3	18	CH_ath_32	10	11	1.35095e-16
Arabidopsis thaliana	3	18	CH_ath_20	18	23	2.12093e-30
Arabidopsis thaliana	4	18	CH_ath_54	10	44	0.0000000246438
Arabidopsis thaliana	3	19	CH_ath_73	4	5	0.0000511825
Brassica rapa	A01	17	CH_bra_111	5	5	0.00000209735
Brassica rapa	A01	17	CH_bra_35	7	8	0.00000000125839
Brassica rapa	A02	17	CH_bra_110	5	5	0.00000209735
Brassica rapa	A03	17	CH_bra_112	5	5	0.00000209735
Brassica rapa	A04	17	CH_bra_228	4	4	0.000240239
Brassica rapa	A05	17	CH_bra_64	6	6	0.0000000182587
Brassica rapa	A06	17	CH_bra_9	10	12	0.00000000000000662262
Brassica rapa	A06	17	CH_bra_63	6	6	0.0000000182587
Brassica rapa	A08	17	CH_bra_153	5	6	0.0000124925
Brassica rapa	A09	17	CH_bra_105	6	9	0.00000149964
Brassica rapa	A09	17	CH_bra_125	6	10	0.00000372112
Brassica rapa	A06	18	CH_bra_8	10	12	0.00000000000000662262
Capsella rubella	scaffold_2	17	CH_cru_316	4	5	0.000848679
Capsella rubella	scaffold_3	17	CH_cru_105	6	6	0.0000000134622
Capsella rubella	scaffold_3	17	CH_cru_157	5	5	0.0000015203
Capsella rubella	scaffold_4	17	CH_cru_317	4	5	0.000848679
Capsella rubella	scaffold_5	17	CH_cru_106	6	6	0.0000000134622
Capsella rubella	scaffold_5	17	CH_cru_196	6	12	0.000011883
Capsella rubella	scaffold_5	17	CH_cru_4	19	23	1.59819e-31
Capsella rubella	scaffold_7	17	CH_cru_107	7	10	0.0000000139164
Capsella rubella	scaffold_5	18	CH_cru_4	19	23	1.59819e-31
Chlamydomonas reinhardtii	chromosome_10	17	CH_cre_16	6	20	0.0000000529873
Chlamydomonas reinhardtii	chromosome_16	17	CH_cre_51	3	3	0.000177414
Chlamydomonas reinhardtii	chromosome_7	17	CH_cre_52	3	3	0.000177414
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_33	4	7	0.0000126536
Citrus sinensis	scaffold00020	17	CH_csi_31	8	11	0.000000000319527
Citrus sinensis	scaffold00033	17	CH_csi_95	5	5	0.00000196254
Citrus sinensis	scaffold00043	17	CH_csi_117	6	11	0.00000877003
Citrus sinensis	scaffold00049	17	CH_csi_53	6	6	0.0000000198271
Citrus sinensis	scaffold00063	17	CH_csi_123	5	6	0.0000116754
Citrus sinensis	scaffold00168	17	CH_csi_77	7	14	0.00000064254
Eucalyptus grandis	scaffold_1	17	CH_egr_656	5	5	0.0000270138
Eucalyptus grandis	scaffold_2	17	CH_egr_133	12	13	5.78883e-17
Eucalyptus grandis	scaffold_2	17	CH_egr_476	7	9	0.000000213815
Eucalyptus grandis	scaffold_2	17	CH_egr_132	13	16	3.59847e-17
Eucalyptus grandis	scaffold_2	17	CH_egr_31	22	27	1.6087e-31
Eucalyptus grandis	scaffold_2	17	CH_egr_475	7	9	0.000000213815
Eucalyptus grandis	scaffold_4	17	CH_egr_177	11	13	0.0000000000000230461
Eucalyptus grandis	scaffold_4	17	CH_egr_416	7	8	0.000000048147
Eucalyptus grandis	scaffold_4	17	CH_egr_616	6	8	0.0000110843
Eucalyptus grandis	scaffold_4	17	CH_egr_729	5	6	0.000160047
Eucalyptus grandis	scaffold_4	17	CH_egr_415	7	8	0.000000048147
Eucalyptus grandis	scaffold_5	17	CH_egr_611	7	13	0.00000966704
Eucalyptus grandis	scaffold_5	17	CH_egr_372	12	37	0.00000000592178
Eucalyptus grandis	scaffold_6	17	CH_egr_317	9	13	0.000000000925297
Eucalyptus grandis	scaffold_6	17	CH_egr_99	16	23	4.80768e-20
Eucalyptus grandis	scaffold_6	17	CH_egr_412	8	12	0.0000000428649
Eucalyptus grandis	scaffold_6	17	CH_egr_225	11	16	0.00000000000123844
Eucalyptus grandis	scaffold_7	17	CH_egr_451	8	13	0.000000109965
Eucalyptus grandis	scaffold_7	17	CH_egr_315	8	9	0.000000000811346
Eucalyptus grandis	scaffold_8	17	CH_egr_314	8	9	0.000000000811346
Eucalyptus grandis	scaffold_8	17	CH_egr_17	22	24	5.73649e-34
Eucalyptus grandis	scaffold_8	17	CH_egr_81	23	62	1.07329e-21
Eucalyptus grandis	scaffold_9	17	CH_egr_327	13	42	0.00000000114345
Eucalyptus grandis	scaffold_9	17	CH_egr_655	5	5	0.0000270138
Eucalyptus grandis	scaffold_2	18	CH_egr_34	22	27	1.6087e-31
Eucalyptus grandis	scaffold_2	18	CH_egr_107	12	13	5.78883e-17
Eucalyptus grandis	scaffold_2	18	CH_egr_105	13	16	3.59847e-17
Eucalyptus grandis	scaffold_4	18	CH_egr_125	11	13	0.0000000000000230461
Eucalyptus grandis	scaffold_4	18	CH_egr_215	12	54	0.000000867282
Eucalyptus grandis	scaffold_5	18	CH_egr_186	12	37	0.00000000592178
Eucalyptus grandis	scaffold_6	18	CH_egr_85	16	23	4.80768e-20
Eucalyptus grandis	scaffold_6	18	CH_egr_131	25	152	0.0000000000000589164
Eucalyptus grandis	scaffold_8	18	CH_egr_19	22	24	5.73649e-34
Eucalyptus grandis	scaffold_8	18	CH_egr_73	23	62	1.07329e-21
Eucalyptus grandis	scaffold_9	18	CH_egr_180	13	42	0.00000000114345
Glycine max	Gm01	17	CH_gma_398	4	4	0.000216996
Glycine max	Gm03	17	CH_gma_71	9	13	0.00000000000458722
Glycine max	Gm05	17	CH_gma_396	4	4	0.000216996
Glycine max	Gm08	17	CH_gma_397	4	4	0.000216996
Glycine max	Gm09	17	CH_gma_188	6	8	0.000000374962
Glycine max	Gm09	17	CH_gma_117	7	9	0.0000000037988
Glycine max	Gm09	17	CH_gma_235	5	5	0.0000017183
Glycine max	Gm10	17	CH_gma_163	7	12	0.0000000818562
Glycine max	Gm11	17	CH_gma_358	7	28	0.000109558
Glycine max	Gm15	17	CH_gma_143	8	18	0.000000034321
Glycine max	Gm19	17	CH_gma_167	6	7	0.0000000943799
Glycine max	Gm20	17	CH_gma_270	8	32	0.0000074789
Glycine max	Gm03	18	CH_gma_55	13	107	0.000000224016
Glycine max	Gm20	18	CH_gma_68	13	156	0.0000270181
Gossypium raimondii	Chr02	17	CH_gra_200	5	5	0.00000320983
Gossypium raimondii	Chr02	17	CH_gra_72	9	11	0.00000000000146415
Gossypium raimondii	Chr03	17	CH_gra_82	9	12	0.00000000000580628
Gossypium raimondii	Chr04	17	CH_gra_284	5	8	0.000175447
Gossypium raimondii	Chr05	17	CH_gra_56	10	12	0.0000000000000167207
Gossypium raimondii	Chr06	17	CH_gra_315	4	4	0.0003326
Gossypium raimondii	Chr09	17	CH_gra_136	7	11	0.0000000945946
Gossypium raimondii	Chr09	17	CH_gra_285	5	8	0.000175447
Gossypium raimondii	Chr09	17	CH_gra_199	5	5	0.00000320983
Gossypium raimondii	Chr10	17	CH_gra_23	13	13	2.18572e-22
Gossypium raimondii	Chr11	17	CH_gra_89	15	80	0.0000000000721564
Gossypium raimondii	Chr09	18	CH_gra_69	10	81	0.000261499
Gossypium raimondii	Chr10	18	CH_gra_23	13	13	2.18572e-22
Gossypium raimondii	Chr11	18	CH_gra_44	16	81	0.00000000000340643
Malus domestica	1	17	CH_mdo_26	10	28	0.0000000000399027
Malus domestica	11	17	CH_mdo_185	4	4	0.0000648506
Malus domestica	11	17	CH_mdo_163	5	8	0.000022037
Malus domestica	12	17	CH_mdo_221	5	11	0.000179018
Malus domestica	14	17	CH_mdo_86	8	27	0.000000183134
Malus domestica	14	17	CH_mdo_48	7	11	0.00000000484757
Malus domestica	16	17	CH_mdo_195	5	11	0.0000981502
Malus domestica	6	17	CH_mdo_55	7	12	0.0000000115719
Malus domestica	6	17	CH_mdo_162	5	8	0.000022037
Malus domestica	6	17	CH_mdo_141	7	26	0.00000891559
Malus domestica	1	18	CH_mdo_9	10	28	0.0000000000399027
Malus domestica	14	18	CH_mdo_29	10	116	0.000152777
Manihot esculenta	scaffold05162	17	CH_mes_12	12	15	1.72469e-17
Manihot esculenta	scaffold06550	17	CH_mes_61	6	6	0.0000000309828
Manihot esculenta	scaffold06683	17	CH_mes_184	4	4	0.000276758
Manihot esculenta	scaffold07488	17	CH_mes_34	7	7	0.000000000325621
Manihot esculenta	scaffold08860	17	CH_mes_185	4	4	0.000276758
Manihot esculenta	scaffold09870	17	CH_mes_65	7	10	0.0000000380057
Manihot esculenta	scaffold11297	17	CH_mes_183	4	4	0.000276758
Manihot esculenta	scaffold05162	18	CH_mes_7	12	15	1.72469e-17
Oryza sativa ssp. japonica	1	17	CH_osa_52	9	13	0.000000000000528873
Oryza sativa ssp. japonica	1	17	CH_osa_314	4	4	0.0000848984
Oryza sativa ssp. japonica	1	17	CH_osa_111	7	11	0.00000000648089
Oryza sativa ssp. japonica	10	17	CH_osa_43	12	33	0.0000000000000539607
Oryza sativa ssp. japonica	2	17	CH_osa_389	6	24	0.000398171
Oryza sativa ssp. japonica	2	17	CH_osa_313	4	4	0.0000848984
Oryza sativa ssp. japonica	2	17	CH_osa_13	14	21	7.00052e-22
Oryza sativa ssp. japonica	3	17	CH_osa_219	5	6	0.00000314237
Oryza sativa ssp. japonica	3	17	CH_osa_312	4	4	0.0000848984
Oryza sativa ssp. japonica	6	17	CH_osa_12	14	20	2.34674e-22
Oryza sativa ssp. japonica	7	17	CH_osa_70	9	19	0.0000000000660994
Oryza sativa ssp. japonica	8	17	CH_osa_167	6	9	0.000000269103
Oryza sativa ssp. japonica	9	17	CH_osa_393	4	5	0.000422379
Oryza sativa ssp. japonica	2	18	CH_osa_15	14	21	7.00052e-22
Oryza sativa ssp. japonica	6	18	CH_osa_13	14	20	2.34674e-22
Oryza sativa ssp. japonica	10	19	CH_osa_2	9	33	0.0000000000653882
Oryza sativa ssp. japonica	10	20	CH_osa_7	10	70	0.00000000187361
Populus trichocarpa	Chr01	17	CH_ptr_31	16	31	4.52166e-20
Populus trichocarpa	Chr01	17	CH_ptr_125	7	7	0.000000000299988
Populus trichocarpa	Chr02	17	CH_ptr_422	4	4	0.00034471
Populus trichocarpa	Chr02	17	CH_ptr_270	5	5	0.00000329961
Populus trichocarpa	Chr02	17	CH_ptr_225	7	13	0.00000048957
Populus trichocarpa	Chr05	17	CH_ptr_482	5	10	0.000798859
Populus trichocarpa	Chr06	17	CH_ptr_269	5	5	0.00000329961
Populus trichocarpa	Chr07	17	CH_ptr_42	17	54	5.42131e-17
Populus trichocarpa	Chr08	17	CH_ptr_423	6	17	0.000356191
Populus trichocarpa	Chr09	17	CH_ptr_267	7	16	0.00000318292
Populus trichocarpa	Chr10	17	CH_ptr_268	5	5	0.00000329961
Populus trichocarpa	Chr11	17	CH_ptr_48	14	30	2.50207e-16
Populus trichocarpa	Chr11	17	CH_ptr_421	4	4	0.00034471
Populus trichocarpa	Chr14	17	CH_ptr_119	9	15	0.000000000128325
Populus trichocarpa	Chr14	17	CH_ptr_49	10	10	2.55022e-16
Populus trichocarpa	Chr01	18	CH_ptr_29	16	31	4.52166e-20
Populus trichocarpa	Chr01	18	CH_ptr_97	11	79	0.0000120468
Populus trichocarpa	Chr07	18	CH_ptr_39	17	54	5.42131e-17
Populus trichocarpa	Chr11	18	CH_ptr_43	14	30	2.50207e-16
Populus trichocarpa	Chr14	18	CH_ptr_66	22	228	0.0000000000400776
Populus trichocarpa	Chr14	18	CH_ptr_44	10	10	2.55022e-16
Prunus persica	scaffold_1	17	CH_ppe_114	9	15	0.000000000208059
Prunus persica	scaffold_1	17	CH_ppe_395	4	4	0.000352226
Prunus persica	scaffold_1	17	CH_ppe_49	15	37	3.88602e-16
Prunus persica	scaffold_1	17	CH_ppe_140	7	8	0.00000000322274
Prunus persica	scaffold_1	17	CH_ppe_287	7	18	0.0000116946
Prunus persica	scaffold_1	17	CH_ppe_45	17	50	3.76249e-17
Prunus persica	scaffold_2	17	CH_ppe_172	6	6	0.00000003889
Prunus persica	scaffold_2	17	CH_ppe_274	6	10	0.000007877
Prunus persica	scaffold_4	17	CH_ppe_120	12	42	0.000000000400613
Prunus persica	scaffold_4	17	CH_ppe_173	6	6	0.00000003889
Prunus persica	scaffold_5	17	CH_ppe_40	13	19	1.26503e-17
Prunus persica	scaffold_5	17	CH_ppe_133	8	12	0.0000000020201
Prunus persica	scaffold_6	17	CH_ppe_77	9	10	0.000000000000435687
Prunus persica	scaffold_7	17	CH_ppe_134	8	12	0.0000000020201
Prunus persica	scaffold_7	17	CH_ppe_174	6	6	0.00000003889
Prunus persica	scaffold_1	18	CH_ppe_36	17	50	3.76249e-17
Prunus persica	scaffold_1	18	CH_ppe_122	10	87	0.0008803
Prunus persica	scaffold_1	18	CH_ppe_38	15	37	3.88602e-16
Prunus persica	scaffold_1	18	CH_ppe_60	10	22	0.000000000262713
Prunus persica	scaffold_4	18	CH_ppe_62	12	42	0.000000000400613
Prunus persica	scaffold_5	18	CH_ppe_34	13	19	1.26503e-17
Ricinus communis	29785	17	CH_rco_203	5	8	0.000152524
Ricinus communis	29792	17	CH_rco_215	4	4	0.000264909
Ricinus communis	29815	17	CH_rco_19	10	12	0.0000000000000221648
Ricinus communis	29910	17	CH_rco_147	9	40	0.00000678528
Ricinus communis	30120	17	CH_rco_214	4	4	0.000264909
Ricinus communis	30147	17	CH_rco_38	8	9	0.0000000000285458
Ricinus communis	30148	17	CH_rco_77	7	9	0.0000000108671
Ricinus communis	30169	17	CH_rco_17	12	21	0.00000000000000968852
Ricinus communis	30170	17	CH_rco_8	14	18	1.08835e-20
Ricinus communis	30170	17	CH_rco_155	6	11	0.0000129786
Ricinus communis	30174	17	CH_rco_97	6	7	0.000000203896
Ricinus communis	30190	17	CH_rco_213	4	4	0.000264909
Ricinus communis	29815	18	CH_rco_11	10	12	0.0000000000000221648
Ricinus communis	30169	18	CH_rco_9	12	21	0.00000000000000968852
Ricinus communis	30170	18	CH_rco_8	14	18	1.08835e-20
Solanum lycopersicum	ch01	17	CH_sly_277	5	7	0.000013659
Solanum lycopersicum	ch03	17	CH_sly_32	10	10	1.12803e-17
Solanum lycopersicum	ch04	17	CH_sly_343	4	4	0.0000925338
Solanum lycopersicum	ch04	17	CH_sly_367	5	10	0.000161009
Solanum lycopersicum	ch06	17	CH_sly_206	5	5	0.000000658215
Solanum lycopersicum	ch07	17	CH_sly_33	10	10	1.12803e-17
Solanum lycopersicum	ch08	17	CH_sly_23	11	11	7.83036e-20
Solanum lycopersicum	ch09	17	CH_sly_79	7	7	0.0000000000329039
Solanum lycopersicum	ch10	17	CH_sly_244	5	6	0.00000392586
Solanum lycopersicum	ch03	18	CH_sly_26	10	10	1.12803e-17
Solanum lycopersicum	ch07	18	CH_sly_27	10	10	1.12803e-17
Solanum lycopersicum	ch08	18	CH_sly_20	11	11	7.83036e-20
Solanum lycopersicum	ch09	18	CH_sly_62	10	44	0.000000022549
Vitis vinifera	chr1	17	CH_vvi_407	4	4	0.000511346
Vitis vinifera	chr13	17	CH_vvi_220	6	8	0.00000191965
Vitis vinifera	chr15	17	CH_vvi_408	4	4	0.000511346
Vitis vinifera	chr15	17	CH_vvi_93	10	15	0.00000000000358774
Vitis vinifera	chr16	17	CH_vvi_152	7	9	0.0000000287184
Vitis vinifera	chr18	17	CH_vvi_221	6	8	0.00000191965
Vitis vinifera	chr18	17	CH_vvi_58	12	17	9.72273e-16
Vitis vinifera	chr18	17	CH_vvi_410	4	4	0.000511346
Vitis vinifera	chr19	17	CH_vvi_26	24	78	2.89611e-23
Vitis vinifera	chr19	17	CH_vvi_409	4	4	0.000511346
Vitis vinifera	chr3	17	CH_vvi_92	10	15	0.00000000000358774
Vitis vinifera	chr7	17	CH_vvi_405	4	4	0.000511346
Vitis vinifera	chr7	17	CH_vvi_45	12	14	1.47614e-17
Vitis vinifera	chr8	17	CH_vvi_406	4	4	0.000511346
Vitis vinifera	chr8	17	CH_vvi_136	7	8	0.00000000644756
Vitis vinifera	chr9	17	CH_vvi_293	5	6	0.0000355915
Vitis vinifera	chr15	18	CH_vvi_50	10	15	0.00000000000358774
Vitis vinifera	chr18	18	CH_vvi_42	12	17	9.72273e-16
Vitis vinifera	chr19	18	CH_vvi_28	24	78	2.89611e-23
Vitis vinifera	chr3	18	CH_vvi_49	10	15	0.00000000000358774
Vitis vinifera	chr7	18	CH_vvi_37	12	14	1.47614e-17
Zea mays	1	17	CH_zma_141	5	7	0.0000121354
Zea mays	3	17	CH_zma_88	6	9	0.000000325176
Zea mays	8	17	CH_zma_143	5	7	0.0000121354
Zea mays	8	17	CH_zma_142	5	7	0.0000121354

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V