PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR016140
Description: Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	13	CH_atr_494	3	3	0.000512933
Amborella trichopoda	scaffold00005	13	CH_atr_363	4	8	0.0000942679
Amborella trichopoda	scaffold00053	13	CH_atr_441	4	10	0.000281603
Amborella trichopoda	scaffold00071	13	CH_atr_493	3	3	0.000512933
Amborella trichopoda	scaffold00174	13	CH_atr_225	4	4	0.0000013582
Amborella trichopoda	scaffold00002	15	CH_atr_10	3	3	0.000124101
Arabidopsis lyrata	scaffold_1	13	CH_aly_347	4	5	0.0000279107
Arabidopsis lyrata	scaffold_8	13	CH_aly_348	4	5	0.0000279107
Arabidopsis lyrata	scaffold_7	14	CH_aly_25	11	23	4.44109e-17
Arabidopsis thaliana	3	13	CH_ath_338	4	5	0.0000336442
Arabidopsis thaliana	4	13	CH_ath_25	13	27	1.22248e-20
Arabidopsis thaliana	5	13	CH_ath_219	5	7	0.000000519843
Arabidopsis thaliana	4	14	CH_ath_18	13	27	1.22248e-20
Arabidopsis thaliana	4	14	CH_ath_24	10	26	0.0000000000000761163
Beta vulgaris	0221.scaffold00594	13	CH_bvu_214	4	5	0.00000364989
Beta vulgaris	Bvchr2.sca001	13	CH_bvu_215	4	5	0.00000364989
Beta vulgaris	Bvchr5.sca001	13	CH_bvu_139	5	7	0.000000035461
Beta vulgaris	Bvchr5.sca024	13	CH_bvu_418	3	3	0.000309115
Brassica rapa	A08	13	CH_bra_469	4	8	0.000718072
Capsella rubella	scaffold_8	13	CH_cru_519	4	7	0.000610391
Capsella rubella	scaffold_7	14	CH_cru_26	10	20	0.0000000000000434402
Carica papaya	supercontig_52	13	CH_cpa_367	3	3	0.000331203
Carica papaya	supercontig_58	13	CH_cpa_368	3	3	0.000331203
Carica papaya	supercontig_58	15	CH_cpa_3	3	3	0.0000771383
Citrullus lanatus	Chr6	13	CH_cla_402	3	3	0.000410988
Citrullus lanatus	Chr7	13	CH_cla_69	6	6	0.00000000000618099
Citrullus lanatus	Chr9	13	CH_cla_403	3	3	0.000410988
Citrullus lanatus	Chr6	15	CH_cla_7	3	3	0.000124753
Citrus sinensis	scaffold00011	13	CH_csi_376	3	3	0.000760963
Citrus sinensis	scaffold00022	13	CH_csi_154	4	4	0.00000260015
Citrus sinensis	scaffold00083	13	CH_csi_375	3	3	0.000760963
Citrus sinensis	scaffold00011	15	CH_csi_8	3	3	0.000305431
Cucumis melo	CM3.5_scaffold00017	13	CH_cme_328	3	3	0.00021801
Cucumis melo	CM3.5_scaffold00017	15	CH_cme_4	3	3	0.0000741467
Eucalyptus grandis	scaffold_7	13	CH_egr_893	4	6	0.0000121048
Eucalyptus grandis	scaffold_8	13	CH_egr_743	4	4	0.000000809798
Glycine max	Gm16	13	CH_gma_226	10	76	0.00000000495901
Glycine max	Gm18	13	CH_gma_33	10	10	6.26958e-21
Glycine max	Gm18	13	CH_gma_191	7	14	0.000000000678087
Glycine max	Gm05	14	CH_gma_38	10	28	0.0000000000000781644
Glycine max	Gm16	14	CH_gma_44	14	134	0.00000000000138553
Glycine max	Gm17	14	CH_gma_43	10	31	0.000000000000261924
Glycine max	Gm18	14	CH_gma_26	10	10	6.26958e-21
Glycine max	Gm01	15	CH_gma_4	3	3	0.000431108
Gossypium raimondii	Chr03	13	CH_gra_381	4	5	0.000034971
Gossypium raimondii	Chr06	13	CH_gra_334	4	4	0.00000701477
Lotus japonicus	chr1	13	CH_lja_270	3	5	0.000405019
Malus domestica	1	13	CH_mdo_421	3	3	0.000190608
Malus domestica	7	13	CH_mdo_200	4	5	0.00000151582
Malus domestica	9	13	CH_mdo_589	3	4	0.000761505
Manihot esculenta	scaffold04043	13	CH_mes_183	4	4	0.00000598224
Manihot esculenta	scaffold06158	13	CH_mes_184	4	4	0.00000598224
Manihot esculenta	scaffold10563	13	CH_mes_236	4	6	0.0000891536
Medicago truncatula	chr1	13	CH_mtr_739	4	6	0.0000147136
Medicago truncatula	chr4	13	CH_mtr_672	4	5	0.00000491219
Medicago truncatula	chr5	13	CH_mtr_1141	3	3	0.000505081
Oryza sativa ssp. japonica	10	13	CH_osa_250	6	10	0.0000000106035
Oryza sativa ssp. japonica	5	13	CH_osa_46	15	53	5.32086e-21
Oryza sativa ssp. japonica	5	14	CH_osa_42	15	53	5.32086e-21
Populus trichocarpa	Chr05	13	CH_ptr_754	3	3	0.000717751
Populus trichocarpa	Chr09	13	CH_ptr_500	4	6	0.0000275012
Populus trichocarpa	Chr10	13	CH_ptr_452	4	5	0.00000918597
Prunus persica	scaffold_1	13	CH_ppe_365	4	4	0.00000115619
Prunus persica	scaffold_1	15	CH_ppe_1	4	4	0.000000280847
Ricinus communis	29586	13	CH_rco_418	3	3	0.000757879
Ricinus communis	29703	13	CH_rco_132	5	6	0.0000000469138
Ricinus communis	29844	13	CH_rco_159	5	7	0.00000016376
Ricinus communis	30169	13	CH_rco_233	4	5	0.0000122489
Ricinus communis	29844	15	CH_rco_1	4	5	0.00000143645
Solanum lycopersicum	ch09	13	CH_sly_210	5	5	0.0000000104175
Solanum lycopersicum	ch09	13	CH_sly_364	4	4	0.00000339358
Solanum tuberosum	chr06	13	CH_stu_598	4	4	0.00000519367
Solanum tuberosum	chr09	13	CH_stu_390	5	5	0.0000000177425
Solanum tuberosum	chr09	13	CH_stu_597	4	4	0.00000519367
Solanum tuberosum	chr08	14	CH_stu_131	11	178	0.00000149026
Solanum tuberosum	chr10	14	CH_stu_87	14	78	6.48745e-16
Theobroma cacao	scaffold_1	13	CH_tca_328	4	4	0.00000158143
Theobroma cacao	scaffold_4	13	CH_tca_364	4	5	0.00000789027
Theobroma cacao	scaffold_6	13	CH_tca_178	5	5	0.00000000415101
Theobroma cacao	scaffold_3	14	CH_tca_63	10	235	0.0000286399
Vitis vinifera	chr13_random	13	CH_vvi_515	3	3	0.000156333
Vitis vinifera	chr16	13	CH_vvi_577	5	40	0.000286605
Vitis vinifera	chr2	13	CH_vvi_92	10	43	0.00000000000000822947
Vitis vinifera	chr5	13	CH_vvi_514	3	3	0.000156333
Vitis vinifera	chr2	14	CH_vvi_51	10	43	0.00000000000000822947
Zea mays	1	13	CH_zma_557	3	3	0.000986927

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V