PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR006501
Description: Pectinesterase inhibitor domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	13	CH_atr_245	4	7	0.00000424971
Amborella trichopoda	scaffold00010	13	CH_atr_280	4	9	0.0000152639
Arabidopsis lyrata	scaffold_3	13	CH_aly_267	6	17	0.00000168209
Arabidopsis lyrata	scaffold_8	13	CH_aly_112	6	6	0.000000000141125
Arabidopsis lyrata	scaffold_8	13	CH_aly_358	4	5	0.0000440945
Arabidopsis lyrata	scaffold_8	13	CH_aly_178	5	5	0.0000000354751
Arabidopsis lyrata	scaffold_4	15	CH_aly_69	3	3	0.000966912
Arabidopsis thaliana	3	13	CH_ath_148	7	17	0.00000000497253
Arabidopsis thaliana	5	13	CH_ath_165	5	5	0.0000000211968
Arabidopsis thaliana	5	13	CH_ath_57	7	7	0.000000000000263685
Beta vulgaris	Bvchr3.sca004	13	CH_bvu_263	4	9	0.0000342175
Beta vulgaris	Bvchr8.sca017	13	CH_bvu_232	6	47	0.0000085806
Brassica rapa	A01	13	CH_bra_265	5	11	0.0000197437
Brassica rapa	A01	13	CH_bra_236	4	4	0.0000109141
Brassica rapa	A02	13	CH_bra_284	5	12	0.0000337336
Brassica rapa	A06	13	CH_bra_363	4	6	0.000162658
Brassica rapa	A06	13	CH_bra_364	4	6	0.000162658
Brassica rapa	A09	13	CH_bra_416	4	7	0.000378313
Capsella rubella	scaffold_3	13	CH_cru_328	4	4	0.0000161185
Capsella rubella	scaffold_8	13	CH_cru_43	10	13	5.49637e-17
Capsella rubella	scaffold_8	13	CH_cru_96	7	8	0.0000000000146239
Capsella rubella	scaffold_8	14	CH_cru_24	10	13	5.49637e-17
Carica papaya	supercontig_145	13	CH_cpa_372	4	13	0.000375958
Carica papaya	supercontig_151	13	CH_cpa_313	3	3	0.000244535
Carica papaya	supercontig_29	13	CH_cpa_460	3	4	0.000976491
Carica papaya	supercontig_3	13	CH_cpa_87	5	8	0.0000000635611
Carica papaya	supercontig_49	13	CH_cpa_114	4	4	0.000000534205
Carica papaya	supercontig_9	13	CH_cpa_461	3	4	0.000976491
Citrullus lanatus	Chr5	13	CH_cla_176	4	4	0.00000103202
Citrullus lanatus	Chr5	13	CH_cla_400	3	3	0.000410988
Citrullus lanatus	Chr6	13	CH_cla_401	3	3	0.000410988
Citrullus lanatus	Chr6	13	CH_cla_177	4	4	0.00000103202
Citrus sinensis	scaffold00001	13	CH_csi_61	6	8	0.000000000266143
Citrus sinensis	scaffold00016	13	CH_csi_332	3	3	0.000444666
Citrus sinensis	scaffold00031	13	CH_csi_16	10	14	4.17789e-19
Citrus sinensis	scaffold00031	14	CH_csi_12	10	14	4.17789e-19
Cucumis melo	CM3.5_scaffold00003	13	CH_cme_199	5	13	0.00000524456
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_228	4	6	0.0000231244
Cucumis melo	CM3.5_scaffold00040	13	CH_cme_54	7	8	0.000000000000227673
Cucumis melo	CM3.5_scaffold00052	13	CH_cme_458	3	3	0.000569759
Eucalyptus grandis	scaffold_4	13	CH_egr_530	5	8	0.00000000365847
Eucalyptus grandis	scaffold_5	13	CH_egr_985	3	3	0.0000545861
Eucalyptus grandis	scaffold_8	13	CH_egr_986	3	3	0.0000545861
Fragaria vesca	LG2	13	CH_fve_283	4	4	0.00000107166
Fragaria vesca	LG2	13	CH_fve_284	4	4	0.00000107166
Fragaria vesca	LG3	13	CH_fve_126	6	8	0.000000000156817
Fragaria vesca	LG5	13	CH_fve_669	4	13	0.000753411
Fragaria vesca	LG7	13	CH_fve_173	6	12	0.0000000051346
Fragaria vesca	scf0513158	13	CH_fve_627	3	3	0.000458877
Fragaria vesca	scf0513160	13	CH_fve_341	6	36	0.0000103273
Fragaria vesca	scf0513160	15	CH_fve_18	5	36	0.0000743203
Glycine max	Gm01	13	CH_gma_368	5	8	0.00000100842
Glycine max	Gm02	13	CH_gma_111	7	8	0.00000000000142412
Glycine max	Gm03	13	CH_gma_161	7	11	0.0000000000582637
Glycine max	Gm03	13	CH_gma_432	4	4	0.00000573723
Glycine max	Gm04	13	CH_gma_717	4	8	0.000397527
Glycine max	Gm06	13	CH_gma_433	4	4	0.00000573723
Glycine max	Gm13	13	CH_gma_431	4	4	0.00000573723
Glycine max	Gm14	13	CH_gma_622	4	7	0.000199271
Glycine max	Gm17	13	CH_gma_505	4	5	0.000028613
Glycine max	Gm17	13	CH_gma_785	4	9	0.000713725
Glycine max	Gm19	13	CH_gma_244	5	5	0.0000000181508
Glycine max	Gm20	13	CH_gma_249	6	11	0.0000000260209
Glycine max	Gm17	14	CH_gma_74	10	187	0.0000362116
Gossypium raimondii	Chr01	13	CH_gra_336	4	4	0.00000721958
Gossypium raimondii	Chr03	13	CH_gra_136	6	6	0.0000000000960159
Gossypium raimondii	Chr06	13	CH_gra_207	5	5	0.0000000264249
Gossypium raimondii	Chr06	13	CH_gra_582	6	46	0.000793822
Gossypium raimondii	Chr09	13	CH_gra_5	22	23	7.18785e-49
Gossypium raimondii	Chr06	14	CH_gra_72	11	173	0.00000243051
Gossypium raimondii	Chr09	14	CH_gra_6	22	23	7.18785e-49
Lotus japonicus	chr4	13	CH_lja_53	7	52	0.0000000208807
Malus domestica	1	13	CH_mdo_58	6	12	0.00000000067536
Malus domestica	13	13	CH_mdo_126	5	10	0.000000119273
Malus domestica	16	13	CH_mdo_199	4	5	0.00000151582
Malus domestica	2	13	CH_mdo_620	5	49	0.000857516
Malus domestica	6	13	CH_mdo_420	3	3	0.000190608
Manihot esculenta	scaffold01127	13	CH_mes_105	5	6	0.000000134529
Manihot esculenta	scaffold06701	13	CH_mes_181	4	4	0.00000571032
Manihot esculenta	scaffold07035	13	CH_mes_180	4	4	0.00000571032
Medicago truncatula	chr3	13	CH_mtr_459	6	15	0.0000000856554
Medicago truncatula	chr4	13	CH_mtr_125	10	24	0.00000000000000121906
Medicago truncatula	chr4	13	CH_mtr_924	5	20	0.00010483
Medicago truncatula	chr4	13	CH_mtr_317	7	17	0.00000000082511
Medicago truncatula	chr6	13	CH_mtr_45	16	42	1.85767e-26
Medicago truncatula	chr6	13	CH_mtr_124	10	24	0.00000000000000121906
Medicago truncatula	chr7	13	CH_mtr_483	5	7	0.000000145921
Medicago truncatula	chr4	14	CH_mtr_89	10	24	0.00000000000000121906
Medicago truncatula	chr6	14	CH_mtr_44	19	83	3.26499e-27
Medicago truncatula	chr6	14	CH_mtr_88	10	24	0.00000000000000121906
Oryza sativa ssp. japonica	10	13	CH_osa_672	4	14	0.000182684
Oryza sativa ssp. japonica	11	13	CH_osa_792	3	4	0.00055825
Oryza sativa ssp. japonica	8	13	CH_osa_175	6	11	0.000000000141794
Populus trichocarpa	Chr02	13	CH_ptr_787	3	3	0.000802949
Populus trichocarpa	Chr05	13	CH_ptr_109	8	11	0.0000000000000160785
Populus trichocarpa	Chr06	13	CH_ptr_188	6	7	0.000000000103142
Populus trichocarpa	Chr12	13	CH_ptr_346	5	8	0.000000314181
Populus trichocarpa	Chr13	13	CH_ptr_557	4	7	0.0000744033
Populus trichocarpa	Chr15	13	CH_ptr_72	10	15	1.86138e-18
Populus trichocarpa	Chr15	14	CH_ptr_62	10	15	1.86138e-18
Populus trichocarpa	Chr05	15	CH_ptr_7	4	11	0.000104751
Prunus persica	scaffold_10	13	CH_ppe_362	4	4	0.00000109196
Prunus persica	scaffold_2	13	CH_ppe_430	5	15	0.00000776112
Prunus persica	scaffold_8	13	CH_ppe_363	4	4	0.00000109196
Prunus persica	scaffold_1	14	CH_ppe_92	10	166	0.000000416024
Ricinus communis	29863	13	CH_rco_417	3	3	0.000757879
Ricinus communis	30128	13	CH_rco_131	5	6	0.0000000469138
Ricinus communis	30147	13	CH_rco_101	6	9	0.00000000205307
Ricinus communis	30174	13	CH_rco_252	4	6	0.0000366511
Solanum lycopersicum	ch01	13	CH_sly_471	4	7	0.0000418739
Solanum lycopersicum	ch03	13	CH_sly_127	8	21	0.000000000006784
Solanum lycopersicum	ch08	13	CH_sly_706	3	3	0.000505335
Solanum lycopersicum	ch12	13	CH_sly_707	3	3	0.000505335
Solanum lycopersicum	ch03	14	CH_sly_64	11	276	0.00000314284
Solanum tuberosum	chr03	13	CH_stu_906	4	8	0.000183532
Solanum tuberosum	chr11	13	CH_stu_905	4	8	0.000183532
Solanum tuberosum	chr12	13	CH_stu_135	8	9	0.00000000000000152939
Solanum tuberosum	chr12	13	CH_stu_1119	3	3	0.000911414
Thellungiella parvula	ch2-4	13	CH_tpa_14	8	8	0.00000000000000138386
Thellungiella parvula	ch3-1	13	CH_tpa_90	6	11	0.0000000436529
Thellungiella parvula	ch6-4	13	CH_tpa_247	4	7	0.000221853
Thellungiella parvula	ch3-1	15	CH_tpa_8	4	11	0.000215849
Theobroma cacao	scaffold_3	13	CH_tca_84	7	9	0.000000000000510241
Theobroma cacao	scaffold_3	13	CH_tca_91	7	10	0.00000000000169735
Theobroma cacao	scaffold_5	13	CH_tca_592	3	3	0.000451898
Theobroma cacao	scaffold_9	13	CH_tca_71	7	8	0.000000000000113618
Vitis vinifera	chr16	13	CH_vvi_149	5	7	0.000000000102464
Zea mays	5	13	CH_zma_417	3	3	0.00023597
Zea mays	7	13	CH_zma_202	5	15	0.00000213326

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V