PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR003690
Description: Mitochodrial transcription termination factor-related

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	13	CH_atr_22	15	52	9.56888e-26
Amborella trichopoda	scaffold00126	13	CH_atr_191	4	4	0.000000264212
Amborella trichopoda	scaffold00010	14	CH_atr_22	15	52	9.56888e-26
Arabidopsis lyrata	scaffold_2	13	CH_aly_7	14	29	3.4487e-29
Arabidopsis lyrata	scaffold_2	14	CH_aly_8	14	29	3.4487e-29
Arabidopsis thaliana	1	13	CH_ath_33	9	24	2.04063e-17
Arabidopsis thaliana	1	14	CH_ath_23	10	67	0.0000000000000145439
Beta vulgaris	Bvchr9.sca026	13	CH_bvu_192	4	7	0.00000119302
Brassica rapa	A01	13	CH_bra_302	3	3	0.0000489174
Brassica rapa	A09	13	CH_bra_148	4	5	0.000000248613
Capsella rubella	scaffold_2	13	CH_cru_24	10	19	1.45243e-20
Capsella rubella	scaffold_2	14	CH_cru_18	10	19	1.45243e-20
Citrullus lanatus	Chr5	13	CH_cla_231	3	3	0.0000282541
Citrus sinensis	scaffold00063	13	CH_csi_60	5	5	0.000000000192352
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_4	17	26	7.55492e-37
Cucumis melo	CM3.5_scaffold00016	13	CH_cme_37	12	66	1.50151e-16
Cucumis melo	CM3.5_scaffold00006	14	CH_cme_4	17	26	7.55492e-37
Cucumis melo	CM3.5_scaffold00016	14	CH_cme_22	12	66	1.50151e-16
Eucalyptus grandis	scaffold_2	13	CH_egr_1129	3	4	0.000202198
Eucalyptus grandis	scaffold_7	13	CH_egr_625	4	4	0.0000000546876
Eucalyptus grandis	scaffold_8	13	CH_egr_218	7	8	4.67028e-16
Fragaria vesca	LG3	13	CH_fve_586	3	4	0.000348482
Fragaria vesca	LG6	13	CH_fve_585	3	4	0.000348482
Fragaria vesca	scf0513018	13	CH_fve_165	5	7	0.00000000309965
Fragaria vesca	scf0513160	13	CH_fve_576	4	17	0.000269694
Glycine max	Gm08	13	CH_gma_250	5	11	0.0000000270605
Glycine max	Gm15	13	CH_gma_276	4	4	0.0000000600288
Glycine max	Gm18	13	CH_gma_112	6	8	0.00000000000158299
Gossypium raimondii	Chr02	13	CH_gra_64	7	7	7.02277e-17
Gossypium raimondii	Chr02	14	CH_gra_62	10	152	0.0000000000741487
Lotus japonicus	chr6	13	CH_lja_24	5	10	0.00000000011577
Malus domestica	2	13	CH_mdo_89	7	66	0.00000000877299
Malus domestica	7	13	CH_mdo_36	5	5	0.000000000019605
Manihot esculenta	scaffold06028	13	CH_mes_104	4	4	0.000000134325
Manihot esculenta	scaffold09798	13	CH_mes_37	6	8	0.00000000000786072
Medicago truncatula	chr2	13	CH_mtr_13	21	78	7.32216e-43
Medicago truncatula	chr4	13	CH_mtr_829	3	3	0.0000458958
Medicago truncatula	chr2	14	CH_mtr_13	24	131	2.66008e-45
Oryza sativa ssp. japonica	11	13	CH_osa_606	3	5	0.000104112
Oryza sativa ssp. japonica	5	13	CH_osa_757	3	7	0.000364088
Oryza sativa ssp. japonica	6	13	CH_osa_61	7	8	5.55378e-18
Populus trichocarpa	Chr01	13	CH_ptr_85	8	12	1.22825e-16
Populus trichocarpa	Chr03	13	CH_ptr_621	4	15	0.00015819
Populus trichocarpa	Chr04	13	CH_ptr_450	4	8	0.00000817053
Populus trichocarpa	Chr11	13	CH_ptr_698	3	4	0.000368768
Populus trichocarpa	Chr16	13	CH_ptr_569	3	3	0.0000922822
Populus trichocarpa	Chr01	14	CH_ptr_77	10	63	0.0000000000000239103
Prunus persica	scaffold_2	13	CH_ppe_208	8	58	0.000000000552819
Prunus persica	scaffold_7	13	CH_ppe_550	3	3	0.0000830911
Solanum lycopersicum	ch04	13	CH_sly_61	7	7	5.72088e-18
Solanum tuberosum	chr04	13	CH_stu_46	10	10	5.84522e-27
Solanum tuberosum	chr04	14	CH_stu_46	10	10	5.84522e-27
Thellungiella parvula	ch2-2	13	CH_tpa_11	7	7	2.04337e-16
Theobroma cacao	scaffold_1	13	CH_tca_444	3	3	0.0000588087
Theobroma cacao	scaffold_4	13	CH_tca_32	9	11	5.92259e-21
Theobroma cacao	scaffold_4	14	CH_tca_30	10	27	8.86187e-19
Vitis vinifera	chr7	13	CH_vvi_242	4	5	0.0000000806821
Zea mays	5	13	CH_zma_302	3	4	0.0000496916

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V