PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001220
Description: Legume lectin domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00012	13	CH_atr_9	16	23	4.72046e-37
Amborella trichopoda	scaffold00049	13	CH_atr_365	3	3	0.0000998879
Amborella trichopoda	scaffold00068	13	CH_atr_364	3	3	0.0000998879
Amborella trichopoda	scaffold00012	14	CH_atr_9	16	23	4.72046e-37
Arabidopsis lyrata	scaffold_1	13	CH_aly_431	3	3	0.000174965
Arabidopsis lyrata	scaffold_4	13	CH_aly_432	3	3	0.000174965
Arabidopsis lyrata	scaffold_6	13	CH_aly_434	3	3	0.000174965
Arabidopsis lyrata	scaffold_6	13	CH_aly_433	3	3	0.000174965
Arabidopsis lyrata	scaffold_8	13	CH_aly_126	5	5	0.000000000499116
Arabidopsis thaliana	1	13	CH_ath_417	3	3	0.000131812
Arabidopsis thaliana	3	13	CH_ath_275	4	6	0.00000299376
Arabidopsis thaliana	3	13	CH_ath_119	6	12	0.000000000398212
Arabidopsis thaliana	5	13	CH_ath_418	3	3	0.000131812
Arabidopsis thaliana	5	13	CH_ath_152	5	7	0.00000000623688
Beta vulgaris	Bvchr6.sca027	13	CH_bvu_286	3	4	0.0000743594
Beta vulgaris	Bvchr7.sca021	13	CH_bvu_35	6	6	0.0000000000000102552
Brassica rapa	A03	13	CH_bra_377	3	3	0.000280991
Brassica rapa	A06	13	CH_bra_376	3	3	0.000280991
Brassica rapa	A10	13	CH_bra_4	10	11	1.78824e-22
Brassica rapa	A10	14	CH_bra_4	10	11	1.78824e-22
Capsella rubella	scaffold_1	13	CH_cru_428	3	3	0.000171273
Capsella rubella	scaffold_5	13	CH_cru_255	4	5	0.00000153389
Capsella rubella	scaffold_5	13	CH_cru_142	5	6	0.0000000032315
Capsella rubella	scaffold_6	13	CH_cru_429	3	3	0.000171273
Capsella rubella	scaffold_8	13	CH_cru_216	4	4	0.000000307222
Carica papaya	supercontig_129	13	CH_cpa_60	4	4	0.00000000374751
Citrullus lanatus	Chr10	13	CH_cla_465	3	7	0.000767622
Citrullus lanatus	Chr9	13	CH_cla_185	6	71	0.00000185196
Citrus sinensis	scaffold00051	13	CH_csi_34	6	6	0.000000000000278529
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_230	3	3	0.0000287938
Cucumis melo	CM3.5_scaffold00050	13	CH_cme_82	6	12	0.0000000000204975
Eucalyptus grandis	scaffold_11	13	CH_egr_38	18	27	3.61266e-34
Eucalyptus grandis	scaffold_3	13	CH_egr_655	5	6	0.000000108406
Eucalyptus grandis	scaffold_7	13	CH_egr_87	13	17	6.22582e-25
Eucalyptus grandis	scaffold_7	13	CH_egr_1211	5	22	0.000454362
Eucalyptus grandis	scaffold_7	13	CH_egr_470	7	13	0.000000000353868
Eucalyptus grandis	scaffold_8	13	CH_egr_283	8	10	0.0000000000000315528
Eucalyptus grandis	scaffold_8	13	CH_egr_580	5	5	0.0000000181198
Eucalyptus grandis	scaffold_9	13	CH_egr_1124	4	7	0.000182425
Eucalyptus grandis	scaffold_11	14	CH_egr_39	18	27	3.61266e-34
Eucalyptus grandis	scaffold_7	14	CH_egr_211	10	74	0.00000000459722
Eucalyptus grandis	scaffold_7	14	CH_egr_82	13	17	6.22582e-25
Fragaria vesca	LG1	13	CH_fve_574	3	4	0.000265248
Glycine max	Gm08	13	CH_gma_74	7	7	0.00000000000000240897
Glycine max	Gm08	13	CH_gma_178	6	10	0.000000000302052
Glycine max	Gm14	13	CH_gma_153	6	8	0.0000000000403903
Glycine max	Gm17	13	CH_gma_195	5	5	0.000000000859271
Gossypium raimondii	Chr07	13	CH_gra_106	6	6	0.000000000000544085
Lotus japonicus	chr3	13	CH_lja_155	3	4	0.0000308998
Malus domestica	3	13	CH_mdo_30	7	19	0.00000000000379389
Manihot esculenta	scaffold06916	13	CH_mes_25	6	6	0.0000000000000653208
Medicago truncatula	chr1	13	CH_mtr_277	6	11	0.000000000114248
Medicago truncatula	chr4	13	CH_mtr_233	6	8	0.00000000000694579
Medicago truncatula	chr7	13	CH_mtr_24	16	32	4.84964e-34
Medicago truncatula	chr8	13	CH_mtr_48	12	21	1.74507e-25
Medicago truncatula	chr7	14	CH_mtr_25	16	32	4.84964e-34
Medicago truncatula	chr8	14	CH_mtr_50	12	21	1.74507e-25
Oryza sativa ssp. japonica	4	13	CH_osa_562	4	8	0.0000403149
Oryza sativa ssp. japonica	7	13	CH_osa_734	3	3	0.000327916
Oryza sativa ssp. japonica	7	13	CH_osa_7	20	34	1.65646e-42
Oryza sativa ssp. japonica	8	13	CH_osa_22	14	27	1.89476e-27
Oryza sativa ssp. japonica	7	14	CH_osa_7	20	34	1.65646e-42
Oryza sativa ssp. japonica	8	14	CH_osa_25	14	27	1.89476e-27
Oryza sativa ssp. japonica	8	15	CH_osa_14	5	23	0.000000856203
Populus trichocarpa	Chr09	13	CH_ptr_86	8	12	2.26194e-16
Prunus persica	scaffold_4	13	CH_ppe_55	9	13	2.58022e-19
Prunus persica	scaffold_6	13	CH_ppe_110	8	21	0.0000000000000611144
Prunus persica	scaffold_4	14	CH_ppe_61	10	64	0.000000000000088538
Ricinus communis	29333	13	CH_rco_321	3	3	0.000132196
Ricinus communis	29751	13	CH_rco_175	6	31	0.000000476312
Solanum lycopersicum	ch10	13	CH_sly_400	4	14	0.00000843453
Solanum tuberosum	chr09	13	CH_stu_679	3	3	0.0000197394
Solanum tuberosum	chr09	13	CH_stu_678	3	3	0.0000197394
Thellungiella parvula	ch5-1	13	CH_tpa_53	5	6	0.00000000134365
Thellungiella parvula	ch6-6	13	CH_tpa_128	4	5	0.000000761537
Theobroma cacao	scaffold_1	13	CH_tca_44	8	11	3.38982e-17
Theobroma cacao	scaffold_2	13	CH_tca_378	4	9	0.0000120656
Theobroma cacao	scaffold_5	13	CH_tca_110	6	9	0.0000000000124765
Theobroma cacao	scaffold_9	13	CH_tca_476	3	3	0.0000743126
Vitis vinifera	chr3	13	CH_vvi_431	6	78	0.0000419289
Vitis vinifera	chr8	13	CH_vvi_485	3	3	0.0000775469
Vitis vinifera	chr3	14	CH_vvi_65	10	169	0.00000000117718
Zea mays	1	13	CH_zma_340	3	3	0.0000743619

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V