PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001087
Description: Lipase, GDSL

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00001	13	CH_atr_144	5	6	0.0000000104291
Arabidopsis lyrata	scaffold_1	13	CH_aly_155	6	10	0.00000000711861
Arabidopsis lyrata	scaffold_3	13	CH_aly_289	4	4	0.00000347217
Arabidopsis lyrata	scaffold_8	13	CH_aly_490	4	8	0.000240576
Arabidopsis thaliana	1	13	CH_ath_37	9	12	2.67868e-16
Arabidopsis thaliana	1	13	CH_ath_104	7	12	0.0000000000991267
Arabidopsis thaliana	5	13	CH_ath_363	4	6	0.0000586317
Arabidopsis thaliana	5	13	CH_ath_522	6	49	0.000500036
Arabidopsis thaliana	1	14	CH_ath_34	11	126	0.0000000168469
Beta vulgaris	0078.scaffold00270	13	CH_bvu_86	6	7	0.000000000288361
Beta vulgaris	Bvchr1.sca001	13	CH_bvu_213	4	4	0.00000346598
Beta vulgaris	Bvchr2.sca001	13	CH_bvu_362	4	8	0.000239884
Beta vulgaris	Bvchr7.sca001	13	CH_bvu_519	3	3	0.000983294
Beta vulgaris	Bvchr8.sca001	13	CH_bvu_520	3	3	0.000983294
Brassica rapa	A05	13	CH_bra_219	4	4	0.00000647605
Brassica rapa	A06	13	CH_bra_318	4	6	0.000096593
Brassica rapa	A08	13	CH_bra_35	7	8	0.00000000000216521
Brassica rapa	A08	14	CH_bra_15	11	74	0.000000000123047
Capsella rubella	scaffold_1	13	CH_cru_286	4	4	0.0000050217
Capsella rubella	scaffold_1	13	CH_cru_153	6	9	0.00000000543679
Capsella rubella	scaffold_6	13	CH_cru_154	6	9	0.00000000543679
Capsella rubella	scaffold_8	13	CH_cru_431	4	7	0.000174215
Carica papaya	supercontig_25	13	CH_cpa_123	4	4	0.00000100837
Carica papaya	supercontig_51	13	CH_cpa_93	5	8	0.000000141655
Citrullus lanatus	Chr2	13	CH_cla_193	4	4	0.00000277964
Citrullus lanatus	Chr2	13	CH_cla_80	6	6	0.0000000000279479
Citrullus lanatus	Chr2	13	CH_cla_501	3	3	0.000859348
Citrullus lanatus	Chr4	13	CH_cla_194	4	4	0.00000277964
Citrullus lanatus	Chr2	14	CH_cla_20	10	129	0.000000426529
Citrullus lanatus	Chr1	15	CH_cla_16	4	15	0.000783423
Citrus sinensis	scaffold00003	13	CH_csi_341	3	3	0.000620843
Citrus sinensis	scaffold00015	13	CH_csi_340	3	3	0.000620843
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_222	5	17	0.0000188055
Cucumis melo	CM3.5_scaffold00067	13	CH_cme_450	3	3	0.000481128
Cucumis melo	CM3.5_scaffold00068	13	CH_cme_202	4	5	0.00000615654
Eucalyptus grandis	scaffold_2	13	CH_egr_419	6	6	0.0000000000366604
Eucalyptus grandis	scaffold_3	13	CH_egr_821	4	4	0.00000371655
Fragaria vesca	LG1	13	CH_fve_254	5	8	0.000000383493
Fragaria vesca	LG2	13	CH_fve_277	5	9	0.00000086081
Fragaria vesca	LG2	13	CH_fve_676	3	3	0.000843582
Fragaria vesca	LG3	13	CH_fve_671	4	11	0.000787342
Fragaria vesca	LG3	13	CH_fve_351	4	5	0.0000120957
Fragaria vesca	LG6	13	CH_fve_675	3	3	0.000843582
Fragaria vesca	scf0513124	13	CH_fve_673	3	3	0.000843582
Fragaria vesca	scf0513168	13	CH_fve_674	3	3	0.000843582
Glycine max	Gm03	13	CH_gma_459	4	4	0.0000110736
Glycine max	Gm06	13	CH_gma_714	4	7	0.000384088
Glycine max	Gm07	13	CH_gma_617	4	6	0.000165106
Glycine max	Gm13	13	CH_gma_208	8	25	0.00000000214484
Glycine max	Gm14	13	CH_gma_270	5	5	0.0000000413843
Glycine max	Gm15	13	CH_gma_271	5	5	0.0000000413843
Glycine max	Gm18	13	CH_gma_456	4	4	0.0000110736
Glycine max	Gm19	13	CH_gma_458	4	4	0.0000110736
Glycine max	Gm19	13	CH_gma_457	4	4	0.0000110736
Glycine max	Gm13	14	CH_gma_65	10	108	0.000000783156
Gossypium raimondii	Chr05	13	CH_gra_309	4	4	0.00000294634
Lotus japonicus	chr6	13	CH_lja_159	4	9	0.0000450404
Malus domestica	4	13	CH_mdo_479	3	3	0.000283036
Malus domestica	9	13	CH_mdo_434	4	12	0.000252481
Manihot esculenta	scaffold07012	13	CH_mes_457	3	3	0.000988495
Manihot esculenta	scaffold07238	13	CH_mes_456	3	3	0.000988495
Manihot esculenta	scaffold09120	13	CH_mes_458	3	3	0.000988495
Medicago truncatula	chr1	13	CH_mtr_472	5	7	0.00000011401
Medicago truncatula	chr1	13	CH_mtr_307	7	17	0.000000000583264
Medicago truncatula	chr2	13	CH_mtr_225	8	19	0.0000000000053083
Medicago truncatula	chr3	13	CH_mtr_352	5	5	0.00000000545081
Medicago truncatula	chr6	13	CH_mtr_1239	3	3	0.000945785
Medicago truncatula	chr7	13	CH_mtr_814	4	7	0.0000340349
Medicago truncatula	chr8	13	CH_mtr_724	4	5	0.0000113669
Medicago truncatula	chr8	13	CH_mtr_1108	6	57	0.000423826
Oryza sativa ssp. japonica	1	13	CH_osa_53	11	22	1.15224e-19
Oryza sativa ssp. japonica	1	13	CH_osa_166	7	15	0.0000000000651105
Oryza sativa ssp. japonica	10	13	CH_osa_490	4	6	0.0000173098
Oryza sativa ssp. japonica	5	13	CH_osa_387	4	4	0.00000115789
Oryza sativa ssp. japonica	6	13	CH_osa_563	4	7	0.0000403214
Oryza sativa ssp. japonica	1	14	CH_osa_48	11	22	1.15224e-19
Populus trichocarpa	Chr19	13	CH_ptr_505	4	5	0.000032642
Prunus persica	scaffold_1	13	CH_ppe_413	4	4	0.00000458855
Prunus persica	scaffold_1	13	CH_ppe_171	7	11	0.0000000000619967
Prunus persica	scaffold_1	13	CH_ppe_412	4	4	0.00000458855
Prunus persica	scaffold_4	13	CH_ppe_170	6	6	0.0000000000555212
Prunus persica	scaffold_6	13	CH_ppe_464	4	5	0.0000228777
Ricinus communis	29680	13	CH_rco_123	5	5	0.0000000167701
Ricinus communis	30026	13	CH_rco_122	5	5	0.0000000167701
Solanum lycopersicum	ch04	13	CH_sly_209	5	5	0.00000000747493
Solanum lycopersicum	ch06	13	CH_sly_244	5	6	0.0000000447421
Solanum lycopersicum	ch10	13	CH_sly_404	5	13	0.00000943743
Solanum tuberosum	chr02	13	CH_stu_344	6	9	0.00000000332777
Solanum tuberosum	chr04	13	CH_stu_252	6	6	0.0000000000399405
Solanum tuberosum	chr11	13	CH_stu_584	7	44	0.00000432996
Thellungiella parvula	ch1-1	13	CH_tpa_95	5	6	0.0000000880244
Thellungiella parvula	ch1-2	13	CH_tpa_108	5	7	0.000000307185
Theobroma cacao	scaffold_2	13	CH_tca_388	4	5	0.0000150922
Theobroma cacao	scaffold_2	13	CH_tca_223	5	6	0.0000000561765
Theobroma cacao	scaffold_4	13	CH_tca_649	3	3	0.000964913
Theobroma cacao	scaffold_6	13	CH_tca_416	6	33	0.0000297061
Theobroma cacao	scaffold_6	13	CH_tca_650	3	3	0.000964913
Theobroma cacao	scaffold_9	13	CH_tca_648	3	3	0.000964913
Vitis vinifera	chr1	13	CH_vvi_363	4	4	0.00000442273
Vitis vinifera	chr10	13	CH_vvi_206	5	5	0.0000000154693
Vitis vinifera	chr13	13	CH_vvi_434	5	15	0.0000451154
Vitis vinifera	chr14	13	CH_vvi_364	4	4	0.00000442273
Vitis vinifera	chr18	13	CH_vvi_107	7	7	0.000000000000183208
Vitis vinifera	chr9	13	CH_vvi_82	8	8	6.20205e-16
Vitis vinifera	chr9	14	CH_vvi_84	11	225	0.0000172632
Zea mays	3	13	CH_zma_203	4	4	0.00000228559
Zea mays	5	13	CH_zma_540	3	3	0.000841561
Zea mays	6	13	CH_zma_346	4	7	0.000079474

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V