PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006869
Description: lipid transport

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00077	1	CH_atr_88	4	5	0.000000343145
Amborella trichopoda	scaffold00092	1	CH_atr_71	4	4	0.0000000686969
Amborella trichopoda	scaffold00077	2	CH_atr_105	4	5	0.00000184806
Amborella trichopoda	scaffold00092	2	CH_atr_87	4	4	0.000000370177
Amborella trichopoda	scaffold00005	3	CH_atr_298	4	8	0.000274052
Amborella trichopoda	scaffold00053	3	CH_atr_363	4	10	0.000817577
Arabidopsis lyrata	scaffold_8	1	CH_aly_171	3	3	0.000124527
Arabidopsis lyrata	scaffold_8	2	CH_aly_278	3	3	0.000371911
Arabidopsis lyrata	scaffold_6	3	CH_aly_81	6	7	0.00000000147754
Arabidopsis lyrata	scaffold_7	3	CH_aly_50	7	8	0.00000000000714396
Arabidopsis lyrata	scaffold_8	3	CH_aly_248	4	5	0.0000576784
Arabidopsis thaliana	3	1	CH_ath_280	4	5	0.000180146
Arabidopsis thaliana	4	1	CH_ath_144	7	22	0.00000102075
Arabidopsis thaliana	4	1	CH_ath_19	9	11	0.0000000000000108114
Arabidopsis thaliana	5	1	CH_ath_322	4	6	0.000537978
Arabidopsis thaliana	3	2	CH_ath_334	4	5	0.00020778
Arabidopsis thaliana	4	2	CH_ath_33	9	11	0.0000000000000149678
Arabidopsis thaliana	4	2	CH_ath_176	7	22	0.00000130966
Arabidopsis thaliana	5	2	CH_ath_411	4	6	0.000620397
Arabidopsis thaliana	4	3	CH_ath_32	10	11	3.76107e-17
Arabidopsis thaliana	4	3	CH_ath_84	9	22	0.000000000256792
Arabidopsis thaliana	5	3	CH_ath_229	5	7	0.00000748819
Arabidopsis thaliana	4	4	CH_ath_14	10	26	0.00000000000535942
Arabidopsis thaliana	4	5	CH_ath_23	10	26	0.00000000000768004
Arabidopsis thaliana	4	6	CH_ath_22	10	11	3.76107e-17
Beta vulgaris	0221.scaffold00594	1	CH_bvu_117	4	5	0.00000971141
Beta vulgaris	Bvchr2.sca001	1	CH_bvu_119	4	5	0.00000971141
Beta vulgaris	Bvchr5.sca001	1	CH_bvu_118	4	5	0.00000971141
Beta vulgaris	Bvchr5.sca024	1	CH_bvu_217	3	3	0.00064005
Beta vulgaris	Bvchr7.sca001	1	CH_bvu_104	4	4	0.00000194704
Beta vulgaris	Bvchr9.sca026	1	CH_bvu_216	3	3	0.00064005
Beta vulgaris	0221.scaffold00594	2	CH_bvu_146	4	5	0.0000182271
Beta vulgaris	Bvchr2.sca001	2	CH_bvu_148	4	5	0.0000182271
Beta vulgaris	Bvchr5.sca001	2	CH_bvu_147	4	5	0.0000182271
Beta vulgaris	Bvchr7.sca001	2	CH_bvu_125	4	4	0.0000036559
Beta vulgaris	0221.scaffold00594	3	CH_bvu_187	4	5	0.0000235533
Beta vulgaris	Bvchr2.sca001	3	CH_bvu_188	4	5	0.0000235533
Beta vulgaris	Bvchr5.sca001	3	CH_bvu_86	5	5	0.0000000177971
Brassica rapa	A01	3	CH_bra_190	4	4	0.0000335555
Brassica rapa	A06	3	CH_bra_191	4	4	0.0000335555
Capsella rubella	scaffold_4	1	CH_cru_179	3	3	0.000171273
Capsella rubella	scaffold_8	1	CH_cru_180	3	3	0.000171273
Capsella rubella	scaffold_4	2	CH_cru_311	3	3	0.000543494
Capsella rubella	scaffold_8	2	CH_cru_312	3	3	0.000543494
Capsella rubella	scaffold_6	3	CH_cru_5	17	20	4.34022e-31
Capsella rubella	scaffold_7	3	CH_cru_91	8	17	0.00000000120258
Capsella rubella	scaffold_8	3	CH_cru_93	6	6	0.00000000143621
Capsella rubella	scaffold_6	6	CH_cru_5	17	20	4.34022e-31
Carica papaya	supercontig_157	1	CH_cpa_24	5	5	0.0000000012708
Carica papaya	supercontig_9	1	CH_cpa_9	8	11	0.00000000000000189676
Carica papaya	supercontig_157	2	CH_cpa_25	5	5	0.00000000396469
Carica papaya	supercontig_9	2	CH_cpa_10	8	11	0.0000000000000123664
Citrullus lanatus	Chr1	3	CH_cla_17	9	9	4.5927e-18
Citrullus lanatus	Chr10	3	CH_cla_58	6	6	0.0000000000873849
Citrullus lanatus	Chr7	3	CH_cla_59	6	6	0.0000000000873849
Citrus sinensis	scaffold00022	1	CH_csi_103	3	3	0.0000904423
Citrus sinensis	scaffold00036	1	CH_csi_154	4	20	0.000695834
Citrus sinensis	scaffold00022	2	CH_csi_152	3	3	0.000285512
Citrus sinensis	scaffold00022	3	CH_csi_113	4	4	0.00000899353
Citrus sinensis	scaffold00053	3	CH_csi_59	5	5	0.0000000416705
Cucumis melo	CM3.5_scaffold00005	3	CH_cme_11	12	13	3.813e-25
Cucumis melo	CM3.5_scaffold00021	3	CH_cme_75	6	9	0.00000000286352
Cucumis melo	CM3.5_scaffold00005	6	CH_cme_10	12	13	3.813e-25
Eucalyptus grandis	scaffold_1	1	CH_egr_509	3	3	0.0000885667
Eucalyptus grandis	scaffold_11	1	CH_egr_511	3	3	0.0000885667
Eucalyptus grandis	scaffold_8	1	CH_egr_510	3	3	0.0000885667
Eucalyptus grandis	scaffold_1	2	CH_egr_695	3	3	0.000213347
Eucalyptus grandis	scaffold_11	2	CH_egr_697	3	3	0.000213347
Eucalyptus grandis	scaffold_8	2	CH_egr_696	3	3	0.000213347
Eucalyptus grandis	scaffold_10	3	CH_egr_405	5	5	0.0000000128326
Eucalyptus grandis	scaffold_4	3	CH_egr_224	7	8	0.00000000000102879
Eucalyptus grandis	scaffold_7	3	CH_egr_682	4	6	0.0000595845
Fragaria vesca	LG6	1	CH_fve_41	5	6	0.000000000251998
Fragaria vesca	LG6	2	CH_fve_67	5	6	0.00000000165834
Fragaria vesca	LG5	3	CH_fve_424	3	3	0.000653383
Glycine max	Gm01	1	CH_gma_230	5	24	0.0000355488
Glycine max	Gm03	1	CH_gma_185	6	42	0.00000720396
Glycine max	Gm09	1	CH_gma_300	3	3	0.00029341
Glycine max	Gm01	2	CH_gma_330	5	24	0.000199343
Glycine max	Gm03	2	CH_gma_237	4	5	0.0000100351
Glycine max	Gm09	2	CH_gma_467	3	3	0.00082346
Glycine max	Gm05	3	CH_gma_31	9	9	4.36395e-17
Glycine max	Gm15	3	CH_gma_106	6	6	0.000000000486161
Glycine max	Gm16	3	CH_gma_173	10	76	0.000000141639
Glycine max	Gm17	3	CH_gma_37	9	10	4.34643e-16
Glycine max	Gm05	6	CH_gma_38	10	28	0.00000000000236447
Glycine max	Gm16	6	CH_gma_46	13	103	0.000000000122708
Glycine max	Gm17	6	CH_gma_39	10	31	0.00000000000789478
Gossypium raimondii	Chr01	1	CH_gra_235	3	3	0.0002344
Gossypium raimondii	Chr11	1	CH_gra_119	4	4	0.000000419567
Gossypium raimondii	Chr01	2	CH_gra_344	3	3	0.000611822
Gossypium raimondii	Chr11	2	CH_gra_149	4	4	0.00000152012
Gossypium raimondii	Chr03	3	CH_gra_286	4	5	0.000119871
Gossypium raimondii	Chr04	3	CH_gra_198	5	8	0.00000661538
Gossypium raimondii	Chr07	3	CH_gra_76	7	7	0.00000000000290645
Gossypium raimondii	Chr11	3	CH_gra_53	10	18	0.0000000000000141184
Gossypium raimondii	Chr11	6	CH_gra_36	10	18	0.0000000000000141184
Lotus japonicus	chr5	1	CH_lja_53	3	3	0.00000772853
Lotus japonicus	chr5	2	CH_lja_90	3	3	0.000048405
Lotus japonicus	chr3	3	CH_lja_168	3	3	0.000231991
Malus domestica	12	1	CH_mdo_103	4	9	0.0000100191
Malus domestica	12	2	CH_mdo_137	4	9	0.0000338764
Malus domestica	1	3	CH_mdo_396	3	3	0.000748294
Manihot esculenta	scaffold06158	1	CH_mes_147	3	3	0.000335183
Manihot esculenta	scaffold08265	1	CH_mes_60	4	4	0.000000811312
Manihot esculenta	scaffold09360	1	CH_mes_146	3	3	0.000335183
Manihot esculenta	scaffold06158	2	CH_mes_226	3	3	0.000677231
Manihot esculenta	scaffold08265	2	CH_mes_73	4	4	0.00000208923
Manihot esculenta	scaffold09360	2	CH_mes_225	3	3	0.000677231
Manihot esculenta	scaffold04043	3	CH_mes_132	4	4	0.000016518
Manihot esculenta	scaffold11581	3	CH_mes_12	8	8	0.0000000000000111955
Manihot esculenta	scaffold04457	9	CH_mes_8	3	3	0.000812513
Medicago truncatula	chr1	1	CH_mtr_536	3	4	0.000577369
Medicago truncatula	chr3	1	CH_mtr_112	7	19	0.0000000000175516
Medicago truncatula	chr4	1	CH_mtr_51	11	80	0.00000000000000685836
Medicago truncatula	chr7	1	CH_mtr_4	18	42	4.87089e-37
Medicago truncatula	chr3	2	CH_mtr_144	7	19	0.0000000000848892
Medicago truncatula	chr4	2	CH_mtr_83	11	80	0.000000000000102364
Medicago truncatula	chr7	2	CH_mtr_5	18	42	3.67757e-35
Medicago truncatula	chr1	3	CH_mtr_582	4	6	0.0000547212
Medicago truncatula	chr1	3	CH_mtr_581	4	6	0.0000547212
Medicago truncatula	chr2	3	CH_mtr_273	6	11	0.0000000121283
Medicago truncatula	chr4	3	CH_mtr_339	5	7	0.000000206802
Medicago truncatula	chr4	3	CH_mtr_511	4	5	0.0000182802
Medicago truncatula	chr4	4	CH_mtr_44	11	80	0.00000000000000685836
Medicago truncatula	chr7	4	CH_mtr_6	18	42	4.87089e-37
Medicago truncatula	chr4	5	CH_mtr_57	11	80	0.000000000000102364
Medicago truncatula	chr7	5	CH_mtr_7	18	42	3.67757e-35
Medicago truncatula	chr3	6	CH_mtr_239	10	260	0.000234076
Oryza sativa ssp. japonica	10	1	CH_osa_15	9	11	4.15078e-21
Oryza sativa ssp. japonica	11	1	CH_osa_174	4	6	0.00000113856
Oryza sativa ssp. japonica	12	1	CH_osa_81	5	5	0.0000000000786803
Oryza sativa ssp. japonica	7	1	CH_osa_279	4	14	0.0000754671
Oryza sativa ssp. japonica	10	2	CH_osa_17	9	11	4.7421e-20
Oryza sativa ssp. japonica	11	2	CH_osa_185	4	6	0.00000322633
Oryza sativa ssp. japonica	12	2	CH_osa_83	5	5	0.0000000002923
Oryza sativa ssp. japonica	7	2	CH_osa_331	4	14	0.000213412
Oryza sativa ssp. japonica	10	3	CH_osa_143	5	6	0.0000000445396
Oryza sativa ssp. japonica	10	3	CH_osa_123	6	10	0.00000000403347
Oryza sativa ssp. japonica	10	3	CH_osa_37	9	11	1.79956e-17
Oryza sativa ssp. japonica	7	3	CH_osa_259	5	14	0.0000146032
Oryza sativa ssp. japonica	10	6	CH_osa_38	10	23	9.24681e-16
Populus trichocarpa	Chr02	1	CH_ptr_159	4	4	0.00000038126
Populus trichocarpa	Chr07	1	CH_ptr_363	3	4	0.000886386
Populus trichocarpa	Chr16	1	CH_ptr_134	5	7	0.0000000135198
Populus trichocarpa	Chr02	2	CH_ptr_211	4	4	0.00000145317
Populus trichocarpa	Chr16	2	CH_ptr_165	5	7	0.0000000726643
Populus trichocarpa	Chr01	3	CH_ptr_324	4	4	0.00000999272
Populus trichocarpa	Chr02	3	CH_ptr_323	4	4	0.00000999272
Prunus persica	scaffold_6	1	CH_ppe_55	6	7	0.00000000000286882
Prunus persica	scaffold_6	2	CH_ppe_81	6	7	0.000000000020799
Prunus persica	scaffold_2	3	CH_ppe_311	4	5	0.0000247722
Prunus persica	scaffold_5	3	CH_ppe_184	5	6	0.000000106073
Ricinus communis	29586	1	CH_rco_177	3	3	0.000379489
Ricinus communis	29703	1	CH_rco_121	4	6	0.0000144752
Ricinus communis	29983	1	CH_rco_35	6	8	0.000000000166141
Ricinus communis	29586	2	CH_rco_232	3	3	0.000661918
Ricinus communis	29703	2	CH_rco_142	4	6	0.0000305626
Ricinus communis	29983	2	CH_rco_40	6	8	0.000000000520231
Ricinus communis	29983	3	CH_rco_69	6	8	0.00000000309718
Ricinus communis	30169	3	CH_rco_184	4	5	0.0000330153
Solanum lycopersicum	ch03	1	CH_sly_19	11	11	5.78853e-24
Solanum lycopersicum	ch08	1	CH_sly_71	10	37	0.000000000000661403
Solanum lycopersicum	ch08	1	CH_sly_84	6	6	0.0000000000283343
Solanum lycopersicum	ch10	1	CH_sly_55	9	17	0.0000000000000169064
Solanum lycopersicum	ch03	2	CH_sly_19	11	11	4.7861e-23
Solanum lycopersicum	ch08	2	CH_sly_89	6	6	0.0000000000874457
Solanum lycopersicum	ch08	2	CH_sly_76	7	8	0.00000000000250103
Solanum lycopersicum	ch10	2	CH_sly_61	9	17	0.0000000000000933204
Solanum lycopersicum	ch03	3	CH_sly_29	11	11	4.05505e-22
Solanum lycopersicum	ch08	3	CH_sly_91	11	39	0.00000000000060929
Solanum lycopersicum	ch09	3	CH_sly_347	4	4	0.0000141614
Solanum lycopersicum	ch03	4	CH_sly_18	11	11	5.78853e-24
Solanum lycopersicum	ch08	4	CH_sly_43	10	37	0.000000000000661403
Solanum lycopersicum	ch10	4	CH_sly_39	10	28	0.0000000000000255113
Solanum lycopersicum	ch03	5	CH_sly_18	11	11	4.7861e-23
Solanum lycopersicum	ch08	5	CH_sly_46	10	37	0.00000000000440537
Solanum lycopersicum	ch10	5	CH_sly_42	10	28	0.000000000000170804
Solanum lycopersicum	ch03	6	CH_sly_30	11	11	4.05505e-22
Solanum lycopersicum	ch08	6	CH_sly_55	11	39	0.00000000000060929
Solanum tuberosum	chr06	1	CH_stu_257	4	4	0.000000875599
Solanum tuberosum	chr08	1	CH_stu_185	5	6	0.000000011346
Solanum tuberosum	chr10	1	CH_stu_169	5	5	0.00000000189443
Solanum tuberosum	chr10	1	CH_stu_74	7	7	0.00000000000000852169
Solanum tuberosum	chr06	2	CH_stu_296	4	4	0.00000254563
Solanum tuberosum	chr08	2	CH_stu_217	5	6	0.0000000433782
Solanum tuberosum	chr10	2	CH_stu_196	5	5	0.00000000724692
Solanum tuberosum	chr10	2	CH_stu_86	7	7	0.0000000000000569862
Solanum tuberosum	chr03	3	CH_stu_417	5	7	0.00000244328
Solanum tuberosum	chr07	3	CH_stu_510	4	4	0.0000234165
Solanum tuberosum	chr08	3	CH_stu_155	11	37	0.00000000000125354
Solanum tuberosum	chr09	3	CH_stu_508	4	4	0.0000234165
Solanum tuberosum	chr09	3	CH_stu_509	4	4	0.0000234165
Solanum tuberosum	chr12	3	CH_stu_507	4	4	0.0000234165
Solanum tuberosum	chr08	6	CH_stu_86	11	37	0.00000000000125354
Thellungiella parvula	ch6-6	1	CH_tpa_101	3	3	0.000134427
Thellungiella parvula	ch6-6	2	CH_tpa_203	3	3	0.000518574
Thellungiella parvula	ch6-1	3	CH_tpa_6	10	13	7.90124e-17
Thellungiella parvula	ch6-1	6	CH_tpa_4	10	13	7.90124e-17
Theobroma cacao	scaffold_1	1	CH_tca_231	3	3	0.000105822
Theobroma cacao	scaffold_4	1	CH_tca_140	4	5	0.000000774643
Theobroma cacao	scaffold_6	1	CH_tca_110	4	4	0.000000155112
Theobroma cacao	scaffold_1	2	CH_tca_307	3	3	0.000276832
Theobroma cacao	scaffold_4	2	CH_tca_176	4	5	0.00000282632
Theobroma cacao	scaffold_6	2	CH_tca_139	4	4	0.000000566195
Theobroma cacao	scaffold_1	3	CH_tca_233	4	4	0.00000437064
Theobroma cacao	scaffold_10r	3	CH_tca_317	5	17	0.0000890958
Theobroma cacao	scaffold_3	3	CH_tca_70	7	9	0.00000000000601241
Vitis vinifera	chr13_random	3	CH_vvi_476	3	3	0.00080851
Vitis vinifera	chr2	3	CH_vvi_237	4	4	0.00000246293
Vitis vinifera	chr5	3	CH_vvi_475	3	3	0.00080851
Vitis vinifera	chr7	3	CH_vvi_276	4	5	0.0000122846
Zea mays	10	3	CH_zma_224	4	6	0.000128206
Zea mays	UNKNOWN	3	CH_zma_68	5	5	0.000000032438

Available child term results

GO term	Description	Number of clusters
GO:0015908	fatty acid transport	3
GO:0030301	cholesterol transport	5
GO:0034196	acylglycerol transport	1

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V