PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005507
Description: copper ion binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00004	1	CH_atr_125	4	5	0.0000149576
Amborella trichopoda	scaffold00010	1	CH_atr_40	6	6	0.0000000000303602
Amborella trichopoda	scaffold00004	2	CH_atr_132	5	8	0.0000246625
Amborella trichopoda	scaffold00010	4	CH_atr_44	10	221	0.0000933416
Amborella trichopoda	scaffold00002	7	CH_atr_5	3	4	0.000879132
Arabidopsis lyrata	scaffold_6	1	CH_aly_132	4	4	0.00000579472
Arabidopsis lyrata	scaffold_6	2	CH_aly_255	4	4	0.000197564
Arabidopsis lyrata	scaffold_6	3	CH_aly_302	4	4	0.000206122
Capsella rubella	scaffold_4	1	CH_cru_197	5	16	0.000230436
Capsella rubella	scaffold_4	2	CH_cru_236	8	36	0.000130506
Capsella rubella	scaffold_4	3	CH_cru_276	8	36	0.000134041
Citrullus lanatus	Chr11	1	CH_cla_100	4	4	0.0000110797
Citrullus lanatus	Chr2	1	CH_cla_62	5	5	0.0000000504588
Citrullus lanatus	Chr3	1	CH_cla_103	5	10	0.0000124757
Citrullus lanatus	Chr9	1	CH_cla_18	8	8	0.00000000000000450454
Citrullus lanatus	Chr2	2	CH_cla_96	5	5	0.00000157848
Citrullus lanatus	Chr3	2	CH_cla_210	5	10	0.000382832
Citrullus lanatus	Chr2	3	CH_cla_122	5	5	0.00000161519
Citrullus lanatus	Chr9	5	CH_cla_45	10	94	0.000430557
Citrullus lanatus	Chr9	6	CH_cla_59	10	94	0.00044959
Citrus sinensis	scaffold00005	1	CH_csi_128	4	7	0.000342438
Citrus sinensis	scaffold00014	1	CH_csi_127	4	7	0.000342438
Citrus sinensis	scaffold00014	2	CH_csi_107	6	15	0.0000558604
Cucumis melo	CM3.5_scaffold00012	1	CH_cme_118	4	6	0.0000536573
Cucumis melo	CM3.5_scaffold00060	1	CH_cme_62	5	5	0.0000000119771
Eucalyptus grandis	scaffold_2	1	CH_egr_312	6	10	0.00000017305
Eucalyptus grandis	scaffold_6	1	CH_egr_189	7	8	0.0000000000353421
Eucalyptus grandis	scaffold_6	1	CH_egr_79	10	11	6.95191e-18
Eucalyptus grandis	scaffold_9	1	CH_egr_284	8	26	0.0000000335164
Eucalyptus grandis	scaffold_2	2	CH_egr_507	6	10	0.00000495943
Eucalyptus grandis	scaffold_6	2	CH_egr_308	7	8	0.00000000180948
Eucalyptus grandis	scaffold_2	3	CH_egr_582	6	10	0.00000524028
Eucalyptus grandis	scaffold_6	4	CH_egr_70	10	11	6.95191e-18
Eucalyptus grandis	scaffold_3	5	CH_egr_179	10	39	0.0000000910177
Eucalyptus grandis	scaffold_6	5	CH_egr_93	10	11	0.00000000000000199543
Eucalyptus grandis	scaffold_3	6	CH_egr_208	10	39	0.000000099645
Fragaria vesca	LG5	1	CH_fve_200	5	13	0.000146161
Fragaria vesca	LG6	1	CH_fve_142	5	9	0.0000145535
Fragaria vesca	LG6	2	CH_fve_259	5	9	0.000185051
Fragaria vesca	LG1	5	CH_fve_46	10	79	0.0000534203
Fragaria vesca	LG1	6	CH_fve_81	10	79	0.0000630684
Glycine max	Gm05	3	CH_gma_435	4	4	0.000247185
Glycine max	Gm18	4	CH_gma_60	11	192	0.0000963881
Gossypium raimondii	Chr07	1	CH_gra_253	4	6	0.000358174
Gossypium raimondii	Chr09	1	CH_gra_16	12	13	9.9518e-23
Gossypium raimondii	Chr10	1	CH_gra_204	4	5	0.000119871
Gossypium raimondii	Chr12	1	CH_gra_126	5	6	0.000000714704
Gossypium raimondii	Chr09	2	CH_gra_21	12	13	1.66271e-19
Gossypium raimondii	Chr09	4	CH_gra_18	12	13	9.9518e-23
Gossypium raimondii	Chr09	5	CH_gra_19	12	13	1.66271e-19
Lotus japonicus	chr1	1	CH_lja_13	5	5	0.00000000185445
Lotus japonicus	chr4	1	CH_lja_21	6	18	0.0000000735488
Lotus japonicus	chr5	1	CH_lja_27	5	10	0.000000463004
Lotus japonicus	chr5	2	CH_lja_85	5	10	0.0000239258
Malus domestica	2	1	CH_mdo_6	9	23	0.00000000000100649
Malus domestica	3	2	CH_mdo_139	4	4	0.0000378127
Malus domestica	3	3	CH_mdo_184	4	4	0.0000397767
Malus domestica	2	4	CH_mdo_20	10	158	0.00000514371
Malus domestica	6	7	CH_mdo_5	3	3	0.000442606
Manihot esculenta	scaffold02431	1	CH_mes_88	4	5	0.0000234994
Medicago truncatula	chr3	1	CH_mtr_128	6	7	0.0000000000976584
Medicago truncatula	chr4	1	CH_mtr_303	4	4	0.00000239494
Medicago truncatula	chr7	1	CH_mtr_62	9	19	0.0000000000000169958
Medicago truncatula	chr3	2	CH_mtr_124	7	8	0.0000000000140099
Medicago truncatula	chr3	3	CH_mtr_89	8	8	0.0000000000000101354
Medicago truncatula	chr4	3	CH_mtr_387	5	6	0.000000702568
Medicago truncatula	chr7	3	CH_mtr_139	9	19	0.00000000000394857
Medicago truncatula	chr3	4	CH_mtr_158	10	235	0.0000317984
Medicago truncatula	chr3	5	CH_mtr_219	11	235	0.000557417
Medicago truncatula	chr7	5	CH_mtr_90	10	54	0.00000000266871
Medicago truncatula	chr3	6	CH_mtr_273	11	235	0.000825189
Medicago truncatula	chr7	6	CH_mtr_110	10	54	0.00000000390494
Oryza sativa ssp. japonica	1	1	CH_osa_177	5	10	0.000001408
Oryza sativa ssp. japonica	8	1	CH_osa_139	5	7	0.000000118064
Oryza sativa ssp. japonica	1	2	CH_osa_240	5	10	0.000030332
Populus trichocarpa	Chr18	1	CH_ptr_195	5	7	0.00000203631
Populus trichocarpa	Chr18	2	CH_ptr_281	5	7	0.000040044
Populus trichocarpa	Chr18	3	CH_ptr_358	5	7	0.0000442364
Prunus persica	scaffold_4	1	CH_ppe_134	5	5	0.0000000974292
Prunus persica	scaffold_7	1	CH_ppe_44	8	9	0.000000000000107477
Prunus persica	scaffold_4	2	CH_ppe_208	5	5	0.00000178439
Prunus persica	scaffold_7	2	CH_ppe_79	8	9	0.0000000000116612
Prunus persica	scaffold_4	3	CH_ppe_246	5	5	0.00000189229
Prunus persica	scaffold_7	3	CH_ppe_96	8	9	0.0000000000128157
Ricinus communis	28644	1	CH_rco_52	5	5	0.0000000324411
Ricinus communis	29927	1	CH_rco_76	5	6	0.000000193952
Ricinus communis	28644	2	CH_rco_104	5	5	0.00000109829
Ricinus communis	29927	2	CH_rco_121	5	6	0.00000654166
Ricinus communis	29927	3	CH_rco_159	5	6	0.00000672513
Solanum lycopersicum	ch07	1	CH_sly_267	4	4	0.0000490524
Solanum tuberosum	chr01	1	CH_stu_147	6	6	0.000000000235065
Solanum tuberosum	chr01	1	CH_stu_370	4	5	0.0000638045
Solanum tuberosum	chr01	1	CH_stu_371	4	5	0.0000638045
Solanum tuberosum	chr05	1	CH_stu_262	5	7	0.00000114769
Solanum tuberosum	chr07	1	CH_stu_205	5	5	0.000000055046
Solanum tuberosum	chr05	2	CH_stu_358	5	7	0.0000217986
Theobroma cacao	scaffold_2	1	CH_tca_190	4	4	0.00000951394
Theobroma cacao	scaffold_9	1	CH_tca_92	5	5	0.0000000395671
Theobroma cacao	scaffold_2	2	CH_tca_260	4	4	0.000121814
Theobroma cacao	scaffold_9	2	CH_tca_148	5	5	0.000000967535
Theobroma cacao	scaffold_1	3	CH_tca_404	5	11	0.000438674
Theobroma cacao	scaffold_2	3	CH_tca_321	4	4	0.000123896
Theobroma cacao	scaffold_9	3	CH_tca_198	5	5	0.000000988298
Vitis vinifera	chr18	1	CH_vvi_65	13	72	0.00000000000259794
Vitis vinifera	chr18	1	CH_vvi_228	4	5	0.000106145
Vitis vinifera	chr18_random	1	CH_vvi_53	13	56	0.0000000000000517887
Vitis vinifera	chr7	1	CH_vvi_137	6	11	0.00000026135
Vitis vinifera	chr18	2	CH_vvi_97	9	19	0.00000000134399
Vitis vinifera	chr7	2	CH_vvi_210	6	11	0.00000864927
Vitis vinifera	chr18	4	CH_vvi_42	13	72	0.00000000000259794
Vitis vinifera	chr18_random	4	CH_vvi_34	13	56	0.0000000000000517887
Vitis vinifera	chr18	5	CH_vvi_50	12	56	0.00000000475676
Zea mays	7	1	CH_zma_150	4	6	0.0000753482

Available child term results

GO term	Description	Number of clusters
GO:0016531	copper chaperone activity	1

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V