PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004650
Description: polygalacturonase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	1	CH_atr_198	3	4	0.000429772
Amborella trichopoda	scaffold00019	1	CH_atr_94	6	35	0.000000569867
Amborella trichopoda	scaffold00104	1	CH_atr_197	3	4	0.000429772
Amborella trichopoda	scaffold00003	2	CH_atr_209	3	4	0.000461991
Amborella trichopoda	scaffold00019	2	CH_atr_95	6	35	0.000000661627
Amborella trichopoda	scaffold00104	2	CH_atr_208	3	4	0.000461991
Amborella trichopoda	scaffold00003	3	CH_atr_341	3	4	0.000733583
Amborella trichopoda	scaffold00019	3	CH_atr_157	4	5	0.00000170317
Amborella trichopoda	scaffold00019	3	CH_atr_158	4	5	0.00000170317
Amborella trichopoda	scaffold00051	3	CH_atr_181	4	6	0.00000510188
Amborella trichopoda	scaffold00104	3	CH_atr_340	3	4	0.000733583
Arabidopsis lyrata	scaffold_3	1	CH_aly_193	3	3	0.000261192
Arabidopsis lyrata	scaffold_7	1	CH_aly_194	3	3	0.000261192
Arabidopsis lyrata	scaffold_3	2	CH_aly_269	3	3	0.000273629
Arabidopsis lyrata	scaffold_7	2	CH_aly_270	3	3	0.000273629
Arabidopsis lyrata	scaffold_3	3	CH_aly_314	3	3	0.000341768
Arabidopsis lyrata	scaffold_7	3	CH_aly_315	3	3	0.000341768
Arabidopsis lyrata	scaffold_7	3	CH_aly_316	3	3	0.000341768
Arabidopsis thaliana	1	1	CH_ath_291	3	3	0.00030373
Arabidopsis thaliana	2	1	CH_ath_290	3	3	0.00030373
Arabidopsis thaliana	3	1	CH_ath_135	4	4	0.000000614692
Arabidopsis thaliana	1	2	CH_ath_345	3	3	0.00030373
Arabidopsis thaliana	2	2	CH_ath_344	3	3	0.00030373
Arabidopsis thaliana	3	2	CH_ath_163	4	4	0.000000614692
Arabidopsis thaliana	1	3	CH_ath_365	3	3	0.000316936
Arabidopsis thaliana	2	3	CH_ath_364	3	3	0.000316936
Arabidopsis thaliana	3	3	CH_ath_175	4	4	0.000000650851
Beta vulgaris	Bvchr1.sca002	1	CH_bvu_78	4	4	0.000000178422
Beta vulgaris	Bvchr3.sca006	1	CH_bvu_37	6	10	0.0000000000917739
Beta vulgaris	Bvchr6.sca027	1	CH_bvu_194	3	4	0.000434163
Beta vulgaris	Bvchr3.sca006	2	CH_bvu_42	6	10	0.0000000000917739
Beta vulgaris	Bvchr6.sca027	2	CH_bvu_261	3	4	0.000434163
Beta vulgaris	Bvchr3.sca006	3	CH_bvu_54	6	10	0.000000000128754
Beta vulgaris	Bvchr6.sca027	3	CH_bvu_319	3	4	0.000510622
Brassica rapa	A03	1	CH_bra_171	3	3	0.000561774
Brassica rapa	A04	1	CH_bra_69	4	4	0.00000132418
Brassica rapa	A03	2	CH_bra_272	3	3	0.00057933
Brassica rapa	A04	2	CH_bra_96	4	4	0.00000137994
Brassica rapa	A03	3	CH_bra_331	3	3	0.000653208
Brassica rapa	A04	3	CH_bra_116	4	4	0.00000162074
Capsella rubella	scaffold_3	1	CH_cru_99	4	4	0.000000696158
Capsella rubella	scaffold_7	1	CH_cru_200	3	3	0.000314496
Capsella rubella	scaffold_3	2	CH_cru_141	4	4	0.000000744169
Capsella rubella	scaffold_7	2	CH_cru_284	3	3	0.000330487
Capsella rubella	scaffold_3	3	CH_cru_169	4	4	0.000000794621
Capsella rubella	scaffold_7	3	CH_cru_327	3	3	0.000347011
Carica papaya	supercontig_136	1	CH_cpa_93	3	3	0.0000846033
Carica papaya	supercontig_136	2	CH_cpa_144	3	3	0.000100947
Carica papaya	supercontig_136	3	CH_cpa_230	3	3	0.000129209
Carica papaya	supercontig_30	3	CH_cpa_231	3	3	0.000129209
Citrullus lanatus	Chr0	1	CH_cla_95	4	5	0.00000624938
Citrullus lanatus	Chr2	1	CH_cla_21	7	7	0.0000000000000208569
Citrullus lanatus	Chr8	1	CH_cla_175	3	3	0.000474669
Citrullus lanatus	Chr0	2	CH_cla_108	4	5	0.00000665234
Citrullus lanatus	Chr2	2	CH_cla_27	7	7	0.0000000000000233315
Citrullus lanatus	Chr8	2	CH_cla_215	3	3	0.000497272
Citrullus lanatus	Chr0	3	CH_cla_138	4	5	0.00000707447
Citrullus lanatus	Chr2	3	CH_cla_34	7	7	0.0000000000000260535
Citrullus lanatus	Chr8	3	CH_cla_302	3	3	0.000520582
Citrus sinensis	scaffold00011	1	CH_csi_61	4	4	0.000000521713
Citrus sinensis	scaffold00180	1	CH_csi_23	7	13	0.00000000000870881
Citrus sinensis	scaffold00396	1	CH_csi_81	5	17	0.00000694954
Citrus sinensis	scaffold00011	2	CH_csi_66	4	4	0.000000575222
Citrus sinensis	scaffold00180	2	CH_csi_25	7	13	0.000000000010399
Citrus sinensis	scaffold00396	2	CH_csi_89	5	17	0.00000785939
Citrus sinensis	scaffold00011	3	CH_csi_82	4	4	0.000000632744
Citrus sinensis	scaffold00180	3	CH_csi_34	7	13	0.0000000000123626
Citrus sinensis	scaffold00396	3	CH_csi_112	5	17	0.00000886186
Cucumis melo	CM3.5_scaffold00066	1	CH_cme_200	3	4	0.000775854
Cucumis melo	CM3.5_scaffold00066	2	CH_cme_256	3	4	0.000822381
Cucumis melo	CM3.5_scaffold00011	3	CH_cme_289	3	3	0.000230588
Cucumis melo	CM3.5_scaffold00066	3	CH_cme_359	3	4	0.00092094
Eucalyptus grandis	scaffold_11	1	CH_egr_215	5	5	0.000000000520036
Eucalyptus grandis	scaffold_3	1	CH_egr_547	3	3	0.000184292
Eucalyptus grandis	scaffold_6	1	CH_egr_548	3	3	0.000184292
Eucalyptus grandis	scaffold_8	1	CH_egr_151	6	6	0.00000000000085085
Eucalyptus grandis	scaffold_11	2	CH_egr_283	5	5	0.000000000565654
Eucalyptus grandis	scaffold_3	2	CH_egr_689	3	3	0.000193663
Eucalyptus grandis	scaffold_6	2	CH_egr_690	3	3	0.000193663
Eucalyptus grandis	scaffold_8	2	CH_egr_192	6	6	0.000000000000942012
Eucalyptus grandis	scaffold_8	2	CH_egr_691	3	3	0.000193663
Eucalyptus grandis	scaffold_1	3	CH_egr_583	4	6	0.0000056868
Eucalyptus grandis	scaffold_11	3	CH_egr_343	5	5	0.000000000666486
Eucalyptus grandis	scaffold_3	3	CH_egr_777	3	3	0.000213347
Eucalyptus grandis	scaffold_6	3	CH_egr_778	3	3	0.000213347
Eucalyptus grandis	scaffold_8	3	CH_egr_225	6	6	0.00000000000114888
Eucalyptus grandis	scaffold_8	3	CH_egr_779	3	3	0.000213347
Fragaria vesca	LG1	1	CH_fve_221	3	3	0.000234924
Fragaria vesca	LG6	1	CH_fve_220	3	3	0.000234924
Fragaria vesca	LG1	2	CH_fve_269	3	3	0.000246111
Fragaria vesca	LG6	2	CH_fve_268	3	3	0.000246111
Fragaria vesca	LG1	3	CH_fve_355	3	3	0.000307397
Fragaria vesca	LG6	3	CH_fve_354	3	3	0.000307397
Glycine max	Gm04	1	CH_gma_327	3	3	0.000419243
Glycine max	Gm04	2	CH_gma_412	3	3	0.000468043
Glycine max	Gm04	3	CH_gma_509	3	3	0.000520491
Gossypium raimondii	Chr11	1	CH_gra_228	3	3	0.000224355
Gossypium raimondii	Chr11	1	CH_gra_229	3	3	0.000224355
Gossypium raimondii	Chr13	1	CH_gra_117	5	11	0.000000314628
Gossypium raimondii	Chr11	2	CH_gra_282	3	3	0.0002344
Gossypium raimondii	Chr11	2	CH_gra_281	3	3	0.0002344
Gossypium raimondii	Chr13	2	CH_gra_131	5	11	0.000000338785
Gossypium raimondii	Chr11	3	CH_gra_336	3	3	0.000244742
Gossypium raimondii	Chr11	3	CH_gra_335	3	3	0.000244742
Gossypium raimondii	Chr13	3	CH_gra_158	5	11	0.000000364402
Malus domestica	13	1	CH_mdo_119	4	11	0.0000329845
Malus domestica	15	1	CH_mdo_118	4	11	0.0000329845
Malus domestica	16	1	CH_mdo_144	3	3	0.0000838465
Malus domestica	6	1	CH_mdo_195	3	4	0.000335076
Malus domestica	13	2	CH_mdo_141	4	11	0.0000381927
Malus domestica	15	2	CH_mdo_140	4	11	0.0000381927
Malus domestica	6	2	CH_mdo_232	3	4	0.000373699
Malus domestica	13	3	CH_mdo_76	5	11	0.0000000853618
Malus domestica	15	3	CH_mdo_202	4	11	0.0000471302
Malus domestica	16	3	CH_mdo_225	3	3	0.000109366
Malus domestica	6	3	CH_mdo_331	3	4	0.000437024
Manihot esculenta	scaffold00341	1	CH_mes_92	4	8	0.000026585
Manihot esculenta	scaffold04269	1	CH_mes_28	5	5	0.000000000743819
Manihot esculenta	scaffold11581	1	CH_mes_120	3	3	0.000191753
Manihot esculenta	scaffold00341	2	CH_mes_103	4	8	0.000026585
Manihot esculenta	scaffold04269	2	CH_mes_28	5	5	0.000000000743819
Manihot esculenta	scaffold11581	2	CH_mes_150	3	3	0.000191753
Manihot esculenta	scaffold00341	3	CH_mes_147	4	8	0.0000318158
Manihot esculenta	scaffold04269	3	CH_mes_38	5	5	0.000000000933878
Manihot esculenta	scaffold11581	3	CH_mes_86	4	4	0.000000457578
Medicago truncatula	chr1	1	CH_mtr_324	4	7	0.0000040918
Medicago truncatula	chr8	1	CH_mtr_90	6	7	0.00000000000101399
Medicago truncatula	chr1	2	CH_mtr_371	4	7	0.00000454267
Medicago truncatula	chr8	2	CH_mtr_102	6	7	0.00000000000118874
Medicago truncatula	chr1	3	CH_mtr_472	4	7	0.00000772225
Medicago truncatula	chr2	3	CH_mtr_671	3	3	0.000165857
Medicago truncatula	chr7	3	CH_mtr_837	3	4	0.000662753
Medicago truncatula	chr8	3	CH_mtr_135	6	7	0.00000000000266231
Medicago truncatula	chr8	4	CH_mtr_90	10	202	0.00000000387818
Medicago truncatula	chr8	5	CH_mtr_92	10	202	0.00000000506591
Medicago truncatula	chr8	6	CH_mtr_121	10	202	0.0000000195315
Oryza sativa ssp. japonica	6	1	CH_osa_390	3	7	0.000946314
Oryza sativa ssp. japonica	7	1	CH_osa_169	4	7	0.000000709477
Oryza sativa ssp. japonica	7	2	CH_osa_167	4	7	0.000000777013
Oryza sativa ssp. japonica	7	3	CH_osa_188	4	7	0.000000777013
Populus trichocarpa	Chr07	1	CH_ptr_186	5	13	0.00000132182
Populus trichocarpa	Chr17	1	CH_ptr_28	12	33	1.92481e-20
Populus trichocarpa	Chr19	1	CH_ptr_129	5	6	0.00000000623008
Populus trichocarpa	Chr07	2	CH_ptr_213	5	13	0.0000015022
Populus trichocarpa	Chr17	2	CH_ptr_32	12	33	2.65573e-20
Populus trichocarpa	Chr19	2	CH_ptr_146	5	6	0.00000000708232
Populus trichocarpa	Chr03	3	CH_ptr_448	4	10	0.000163626
Populus trichocarpa	Chr07	3	CH_ptr_277	5	13	0.00000204018
Populus trichocarpa	Chr17	3	CH_ptr_40	12	33	5.72768e-20
Populus trichocarpa	Chr19	3	CH_ptr_190	5	6	0.00000000962569
Populus trichocarpa	Chr17	4	CH_ptr_26	12	33	1.92481e-20
Populus trichocarpa	Chr17	5	CH_ptr_28	12	33	2.65573e-20
Populus trichocarpa	Chr17	6	CH_ptr_33	12	33	5.72768e-20
Prunus persica	scaffold_1	1	CH_ppe_292	3	3	0.000309534
Prunus persica	scaffold_3	1	CH_ppe_163	5	11	0.000000650765
Prunus persica	scaffold_4	1	CH_ppe_212	4	6	0.0000100066
Prunus persica	scaffold_6	1	CH_ppe_293	3	3	0.000309534
Prunus persica	scaffold_7	1	CH_ppe_294	3	3	0.000309534
Prunus persica	scaffold_1	2	CH_ppe_355	3	3	0.000324757
Prunus persica	scaffold_3	2	CH_ppe_190	5	11	0.000000705788
Prunus persica	scaffold_4	2	CH_ppe_238	4	6	0.0000106731
Prunus persica	scaffold_6	2	CH_ppe_356	3	3	0.000324757
Prunus persica	scaffold_7	2	CH_ppe_357	3	3	0.000324757
Prunus persica	scaffold_1	3	CH_ppe_441	3	3	0.000356684
Prunus persica	scaffold_3	3	CH_ppe_230	5	11	0.000000826977
Prunus persica	scaffold_4	3	CH_ppe_291	4	6	0.0000121053
Prunus persica	scaffold_6	3	CH_ppe_442	3	3	0.000356684
Prunus persica	scaffold_7	3	CH_ppe_443	3	3	0.000356684
Ricinus communis	30042	1	CH_rco_2	11	11	5.45925e-27
Ricinus communis	30042	2	CH_rco_2	11	11	5.45925e-27
Ricinus communis	30042	3	CH_rco_3	11	11	5.45925e-27
Ricinus communis	30042	4	CH_rco_2	11	11	5.45925e-27
Ricinus communis	30042	5	CH_rco_2	11	11	5.45925e-27
Ricinus communis	30042	6	CH_rco_3	11	11	5.45925e-27
Solanum lycopersicum	ch02	1	CH_sly_347	3	3	0.000196085
Solanum lycopersicum	ch05	1	CH_sly_171	4	4	0.000000337525
Solanum lycopersicum	ch12	1	CH_sly_105	6	12	0.000000000870934
Solanum lycopersicum	ch12	1	CH_sly_346	3	3	0.000196085
Solanum lycopersicum	ch02	2	CH_sly_378	3	3	0.000196085
Solanum lycopersicum	ch05	2	CH_sly_177	4	4	0.000000337525
Solanum lycopersicum	ch12	2	CH_sly_377	3	3	0.000196085
Solanum lycopersicum	ch12	2	CH_sly_103	6	12	0.000000000870934
Solanum lycopersicum	ch02	3	CH_sly_502	3	3	0.000215683
Solanum lycopersicum	ch05	3	CH_sly_231	4	4	0.000000383635
Solanum lycopersicum	ch12	3	CH_sly_501	3	3	0.000215683
Solanum lycopersicum	ch12	3	CH_sly_142	6	12	0.00000000105845
Solanum tuberosum	chr01	1	CH_stu_98	6	6	0.000000000000544824
Solanum tuberosum	chr02	1	CH_stu_228	4	4	0.000000234885
Solanum tuberosum	chr12	1	CH_stu_127	6	8	0.0000000000152155
Solanum tuberosum	chr01	2	CH_stu_107	6	6	0.000000000000606502
Solanum tuberosum	chr02	2	CH_stu_247	4	4	0.000000251968
Solanum tuberosum	chr12	2	CH_stu_143	6	8	0.0000000000169372
Solanum tuberosum	chr01	3	CH_stu_152	6	6	0.0000000000010092
Solanum tuberosum	chr02	3	CH_stu_359	4	4	0.000000351759
Solanum tuberosum	chr12	3	CH_stu_192	6	8	0.0000000000281761
Thellungiella parvula	ch3-1	1	CH_tpa_118	3	3	0.00032418
Thellungiella parvula	ch4-6	1	CH_tpa_21	5	5	0.00000000163407
Thellungiella parvula	ch7-5	1	CH_tpa_119	3	3	0.00032418
Thellungiella parvula	ch3-1	2	CH_tpa_175	3	3	0.000340947
Thellungiella parvula	ch4-6	2	CH_tpa_35	5	5	0.00000000177997
Thellungiella parvula	ch7-5	2	CH_tpa_176	3	3	0.000340947
Thellungiella parvula	ch3-1	3	CH_tpa_209	3	3	0.000358284
Thellungiella parvula	ch4-6	3	CH_tpa_39	5	5	0.00000000193611
Thellungiella parvula	ch7-5	3	CH_tpa_210	3	3	0.000358284
Theobroma cacao	scaffold_5	1	CH_tca_225	3	3	0.0000688751
Theobroma cacao	scaffold_5	2	CH_tca_251	3	3	0.0000743126
Theobroma cacao	scaffold_5	3	CH_tca_319	3	3	0.0000989208
Vitis vinifera	chr12	1	CH_vvi_48	8	13	0.000000000000016118
Vitis vinifera	chr8	1	CH_vvi_147	4	4	0.000000666127
Vitis vinifera	chr9	1	CH_vvi_176	4	5	0.0000033248
Vitis vinifera	chr12	2	CH_vvi_48	8	13	0.0000000000000211905
Vitis vinifera	chr9	2	CH_vvi_198	4	5	0.00000379482
Vitis vinifera	chr12	3	CH_vvi_33	10	13	3.85309e-20
Vitis vinifera	chr16	3	CH_vvi_417	3	3	0.000406487
Vitis vinifera	chr9	3	CH_vvi_252	4	5	0.00000488245
Vitis vinifera	chr12	6	CH_vvi_30	10	13	3.85309e-20
Zea mays	6	1	CH_zma_5	14	16	9.75902e-35
Zea mays	6	2	CH_zma_3	14	16	1.29358e-34
Zea mays	6	3	CH_zma_3	14	16	1.70509e-34
Zea mays	6	4	CH_zma_3	14	16	9.75902e-35
Zea mays	6	5	CH_zma_3	14	16	1.29358e-34
Zea mays	6	6	CH_zma_3	14	16	1.70509e-34

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V