Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00007a00024930	Zea mays B104	HOM04x5M012281	ORTHO04x5M003442	2.3e-152	541.2	344	100.0
Zm00007a00014453	Zea mays B104	HOM04x5M012281	ORTHO04x5M251481	6.4e-70	267.3	231	72.7
Zm00007a00038090	Zea mays B104	HOM04x5M012281	ORTHO04x5M022609	1.3e-67	259.6	190	73.2
Zm00008a033609	Zea mays PH207	HOM04x5M003062	ORTHO04x5M003442	1.7e-67	259.2	219	71.2
Zm00001d007505	Zea mays B73	HOM04x5M012281	ORTHO04x5M022609	1.1e-64	250.0	176	98.9
Zm00001d038934	Zea mays B73	HOM04x5M012281	ORTHO04x5M022609	5.1e-51	204.5	176	71.0
Zm00007a00015140	Zea mays B104	HOM04x5M017572	ORTHO04x5M031426	2.4e-45	185.7	123	93.5
Zm00007a00015141	Zea mays B104	HOM04x5M012281	ORTHO04x5M031107	4.3e-42	174.9	159	61.0
Zm00008a033635	Zea mays PH207	HOM04x5M012281	ORTHO04x5M031107	4.3e-42	174.9	159	61.0
Zm00007a00032153	Zea mays B104	HOM04x5M012281	ORTHO04x5M250424	1.1e-29	133.7	66	95.5
Zm00001d049043	Zea mays B73	HOM04x5M000476	ORTHO04x5M003260	3.2e-29	132.1	137	71.5
Zm00007a00027883	Zea mays B104	HOM04x5M000476	ORTHO04x5M003260	3.2e-29	132.1	137	71.5
Zm00008a015178	Zea mays PH207	HOM04x5M000476	ORTHO04x5M003260	3.2e-29	132.1	137	71.5
Zm00008a033634	Zea mays PH207	HOM04x5M017572	ORTHO04x5M031426	1.2e-28	130.2	80	85.0
Seita.8G095000	Setaria italica	HOM04x5M000476	ORTHO04x5M003260	2.7e-20	102.4	139	69.8
Zm00007a00011191	Zea mays B104	HOM04x5M017572	ORTHO04x5M031242	3.0e-19	99.0	90	83.3
Zm00008a021343	Zea mays PH207	HOM04x5M017572	ORTHO04x5M031242	3.0e-19	99.0	90	83.3
PH01000315G0410	Phyllostachys edulis	HOM04x5M000476	ORTHO04x5M003260	1.1e-16	90.5	140	60.7
PH01004986G0080	Phyllostachys edulis	HOM04x5M000476	ORTHO04x5M003260	1.0e-14	84.0	140	59.3
Pgl_GLEAN_10018860	Cenchrus americanus	HOM04x5M000476	ORTHO04x5M003260	5.0e-14	81.6	144	65.3
MisinT522300	Miscanthus sinensis	HOM04x5M000476	ORTHO04x5M003260	1.9e-13	79.7	139	60.4
LOC_Os11g11020	Oryza sativa ssp. japonica	HOM04x5M000476	ORTHO04x5M003260	1.9e-13	79.7	140	39.3
OsR498G1119621400.01	Oryza sativa ssp. indica	HOM04x5M000476	ORTHO04x5M003260	7.2e-13	77.8	140	52.1
HORVU4Hr1G016440	Hordeum vulgare	HOM04x5M000476	ORTHO04x5M003260	2.1e-12	76.3	138	62.3
TraesCS4A02G203900	Triticum aestivum	HOM04x5M000476	ORTHO04x5M003260	3.7e-09	65.5	138	58.0
TRITD4Av1G157930	Triticum turgidum	HOM04x5M000476	ORTHO04x5M003260	3.7e-09	65.5	138	58.0
TraesCS4B02G107700	Triticum aestivum	HOM04x5M000476	ORTHO04x5M003260	4.8e-09	65.1	138	58.0
TRITD4Bv1G041130	Triticum turgidum	HOM04x5M000476	ORTHO04x5M003260	4.8e-09	65.1	138	58.0
TraesCS4D02G104800	Triticum aestivum	HOM04x5M000476	ORTHO04x5M003260	2.4e-08	62.8	138	50.0
Zm00007a00046060	Zea mays B104	HOM04x5M011167	ORTHO04x5M254932	4.1e-08	62.0	32	90.6
Zjn_sc00207.1.g00090.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M000476	ORTHO04x5M003260	2.6e-07	59.3	138	52.2
Misin10G081800	Miscanthus sinensis	HOM04x5M000476	ORTHO04x5M003260	2.9e-06	55.8	29	86.2
Sspon.05G0016210-1A	Saccharum spontaneum	HOM04x5M000476	ORTHO04x5M003260	2.9e-06	55.8	29	86.2
Sspon.05G0016210-3C	Saccharum spontaneum	HOM04x5M000476	ORTHO04x5M003260	2.9e-06	55.8	29	86.2
Sobic.005G100900	Sorghum bicolor	HOM04x5M000476	ORTHO04x5M003260	8.5e-06	54.3	27	85.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment