Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.03G0027700-1B	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	4.8e-43	177.2	190	100.0
Sspon.03G0027700-2C	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	4.2e-39	164.1	88	98.9
Sspon.03G0027700-1P	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	4.2e-39	164.1	88	98.9
Misin05G403900	Miscanthus sinensis	HOM04x5M001523	ORTHO04x5M001589	2.7e-38	161.4	88	97.7
Zm00007a00002495	Zea mays B104	HOM04x5M001523	ORTHO04x5M001589	2.3e-37	158.3	88	95.5
Sobic.003G412300	Sorghum bicolor	HOM04x5M001523	ORTHO04x5M001589	1.3e-35	152.5	88	93.2
Seita.5G438400	Setaria italica	HOM04x5M001523	ORTHO04x5M001589	1.1e-34	149.4	87	90.8
OB01G51640	Oryza brachyantha	HOM04x5M001523	ORTHO04x5M001589	2.0e-33	145.2	88	86.4
LOC_Os01g70320	Oryza sativa ssp. japonica	HOM04x5M001523	ORTHO04x5M001589	5.9e-33	143.7	90	87.8
OsR498G0102629600.01	Oryza sativa ssp. indica	HOM04x5M001523	ORTHO04x5M001589	5.9e-33	143.7	90	87.8
PH01002160G0270	Phyllostachys edulis	HOM04x5M001523	ORTHO04x5M001589	2.9e-32	141.4	89	87.6
Bradi2g59510	Brachypodium distachyon	HOM04x5M001523	ORTHO04x5M001589	3.2e-31	137.9	90	85.6
TraesCS3A02G442300	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	1.6e-30	135.6	90	84.4
TRITD3Av1G250250	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	1.6e-30	135.6	90	84.4
HORVU3Hr1G096450	Hordeum vulgare	HOM04x5M001523	ORTHO04x5M001589	2.1e-30	135.2	90	83.3
TraesCS3B02G476100	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	2.1e-30	135.2	90	83.3
TraesCS3D02G435000	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	2.1e-30	135.2	90	83.3
TRITD3Bv1G242080	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	2.1e-30	135.2	90	83.3
LP009590	Lolium perenne	HOM04x5M001523	ORTHO04x5M001589	2.0e-28	128.6	89	78.7
Zjn_sc00009.1.g01850.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M001523	ORTHO04x5M001589	1.1e-23	112.8	85	74.1
Pgl_GLEAN_10000952	Cenchrus americanus	HOM04x5M001523	ORTHO04x5M001589	3.3e-20	101.3	89	66.3
Aco015077	Ananas comosus	HOM04x5M001523	ORTHO04x5M001589	1.6e-14	82.4	74	64.9
CALSI_Maker00016663	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M001589	4.7e-14	80.9	91	59.3
p5.00_sc00057_p0063	Elaeis guineensis	HOM04x5M001523	ORTHO04x5M001589	6.1e-14	80.5	89	60.7
p5.00_sc01766_p0001	Elaeis guineensis	HOM04x5M001523	ORTHO04x5M001589	7.5e-12	73.6	94	55.3
Ma04_g00060	Musa acuminata	HOM04x5M001523	ORTHO04x5M001589	1.3e-11	72.8	92	54.3
CALSI_Maker00037144	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M001589	6.3e-11	70.5	73	63.0
PEQU_07861	Phalaenopsis equestris	HOM04x5M001523	ORTHO04x5M001589	4.1e-10	67.8	97	49.5
ASH_gene19761	Apostasia shenzhenica	HOM04x5M001523	ORTHO04x5M001589	3.5e-09	64.7	104	45.2
Zosma69g00810	Zostera marina	HOM04x5M001523	ORTHO04x5M001589	1.3e-08	62.8	95	49.5
CALSI_Maker00018832	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M001589	5.0e-08	60.8	95	50.5
Potri.015G104600	Populus trichocarpa	HOM04x5M001523	ORTHO04x5M001589	3.2e-07	58.2	89	48.3
Zm00001d042262	Zea mays B73	HOM04x5M000360	ORTHO04x5M000256	2.1e-06	55.5	28	96.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment