Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Pgl_GLEAN_10003405	Cenchrus americanus	HOM04x5M008093	ORTHO04x5M010390	2.9e-113	410.6	210	100.0
Sobic.004G178600	Sorghum bicolor	HOM04x5M008093	ORTHO04x5M010390	7.4e-37	156.8	468	32.5
Sspon.07G0026260-2D	Saccharum spontaneum	HOM04x5M008093	ORTHO04x5M010390	1.4e-30	136.0	97	76.3
Sspon.07G0026260-1B	Saccharum spontaneum	HOM04x5M008093	ORTHO04x5M010390	1.1e-29	132.9	97	75.3
Sobic.004G178901	Sorghum bicolor	HOM04x5M008093	ORTHO04x5M010390	5.3e-27	124.0	79	82.3
OsR498G0100190400.01	Oryza sativa ssp. indica	HOM04x5M008093	ORTHO04x5M010390	4.0e-22	107.8	136	47.1
TraesCS7B02G392200	Triticum aestivum	HOM04x5M008093	ORTHO04x5M010390	7.5e-21	103.6	174	38.5
TraesCSU02G244400	Triticum aestivum	HOM04x5M008093	ORTHO04x5M010390	2.2e-20	102.1	174	38.5
Oropetium_20150105_18180	Oropetium thomaeum	HOM04x5M008093	ORTHO04x5M010390	1.2e-18	96.3	71	71.8
Zm00007a00030038	Zea mays B104	HOM04x5M008093	ORTHO04x5M010390	1.8e-14	82.4	65	66.2
Sobic.002G010400	Sorghum bicolor	HOM04x5M008093	ORTHO04x5M010390	3.0e-14	81.6	98	57.1
Zm00001d018670	Zea mays B73	HOM04x5M008093	ORTHO04x5M010390	8.8e-14	80.1	66	62.1
Zm00001d018673	Zea mays B73	HOM04x5M008093	ORTHO04x5M010390	1.5e-13	79.3	118	46.6
Misin17G172600	Miscanthus sinensis	HOM04x5M008093	ORTHO04x5M010390	2.0e-13	79.0	69	59.4
Zm00007a00051954	Zea mays B104	HOM04x5M008093	ORTHO04x5M010390	3.4e-13	78.2	118	45.8
LOC_Os01g05880	Oryza sativa ssp. japonica	HOM04x5M008093	ORTHO04x5M010390	1.7e-12	75.9	65	61.5
Sspon.02G0025710-2B	Saccharum spontaneum	HOM04x5M008093	ORTHO04x5M010390	2.8e-12	75.1	91	53.8
Sspon.02G0025710-1A	Saccharum spontaneum	HOM04x5M008093	ORTHO04x5M010390	2.8e-12	75.1	91	53.8
Sspon.02G0025710-3D	Saccharum spontaneum	HOM04x5M008093	ORTHO04x5M010390	2.8e-12	75.1	73	60.3
Seita.1G081900	Setaria italica	HOM04x5M008093	ORTHO04x5M010390	8.3e-12	73.6	92	47.8
Zjn_sc00009.1.g01695.1.br	Zoysia japonica ssp. nagirizaki	HOM04x5M008093	ORTHO04x5M010390	4.5e-10	67.8	73	53.4
Pgl_GLEAN_10026820	Cenchrus americanus	HOM04x5M008093	ORTHO04x5M010390	1.3e-09	66.2	94	44.7
LOC_Os01g05890	Oryza sativa ssp. japonica	HOM04x5M008093	ORTHO04x5M010390	1.3e-09	66.2	62	61.3
Sobic.003G414000	Sorghum bicolor	HOM04x5M008093	ORTHO04x5M010390	2.2e-09	65.5	68	51.5
Zm00008a026687	Zea mays PH207	HOM04x5M008093	ORTHO04x5M010390	2.2e-09	65.5	109	35.8
Pgl_GLEAN_10005903	Cenchrus americanus	HOM04x5M008093	ORTHO04x5M010390	2.9e-09	65.1	66	57.6
Bradi2g59642	Brachypodium distachyon	HOM04x5M002036	ORTHO04x5M002269	1.6e-07	59.3	69	50.7
Seita.5G439900	Setaria italica	HOM04x5M008093	ORTHO04x5M002269	1.6e-07	59.3	80	43.8
Pgl_GLEAN_10005902	Cenchrus americanus	HOM04x5M008093	ORTHO04x5M010390	5.2e-06	54.3	40	62.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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