Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
OB0111G10040	Oryza brachyantha	HOM04x5M000209	ORTHO04x5M000158	7.4e-78	292.4	138	100.0
LOC_Os11g33260	Oryza sativa ssp. japonica	HOM04x5M000638	ORTHO04x5M005682	6.8e-31	136.3	74	89.2
OsR498G0100130400.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	2.0e-30	134.8	74	86.5
OsR498G0917518200.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	2.0e-30	134.8	74	86.5
TRITD1Av1G014550	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.6e-22	107.8	73	67.1
TRITD1Bv1G024090	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	9.9e-22	105.9	73	64.4
TRITD6Bv1G207810	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.3e-21	105.5	73	65.8
TRITD1Av1G167930	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.2e-21	104.8	73	64.4
HORVU0Hr1G018940	Hordeum vulgare	HOM04x5M000209	ORTHO04x5M000158	1.6e-19	98.6	73	68.5
Zm00001d017354	Zea mays B73	HOM04x5M000209	ORTHO04x5M000158	8.9e-15	82.8	71	54.9
TRITD6Av1G021720	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.9e-13	77.8	70	57.1
TRITD2Bv1G146730	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	3.8e-13	77.4	70	57.1
HORVU5Hr1G045120	Hordeum vulgare	HOM04x5M000209	ORTHO04x5M000158	1.9e-12	75.1	70	54.3
TRITD3Av1G218470	Triticum turgidum	HOM04x5M001064	ORTHO04x5M003426	1.9e-12	75.1	73	53.4
TRITD3Av1G277200	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.4e-12	74.7	66	56.1
OsR498G0409273800.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	3.2e-12	74.3	73	54.8
OsR498G0409509100.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	3.2e-12	74.3	73	54.8
OsR498G1222042500.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	3.2e-12	74.3	73	54.8
TRITD2Bv1G131290	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	3.2e-12	74.3	69	55.1
TRITD3Bv1G216130	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	4.2e-12	73.9	73	50.7
TRITD4Av1G262660	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	4.2e-12	73.9	69	56.5
Sspon.01G0063210-1D	Saccharum spontaneum	HOM04x5M000209	ORTHO04x5M000158	5.4e-12	73.6	72	51.4
TRITD6Bv1G211900	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	5.4e-12	73.6	66	59.1
TRITD5Av1G150090	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	9.3e-12	72.8	68	50.0
TRITD3Bv1G263540	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.2e-11	72.4	68	51.5
TRITD2Bv1G172350	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.2e-11	72.4	66	57.6
HORVU4Hr1G012940	Hordeum vulgare	HOM04x5M000209	ORTHO04x5M000158	1.6e-11	72.0	60	60.0
HORVU7Hr1G035330	Hordeum vulgare	HOM04x5M000209	ORTHO04x5M000158	2.1e-11	71.6	73	50.7
OsR498G1019183600.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	2.1e-11	71.6	73	52.1
TRITD6Bv1G215230	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.1e-11	71.6	70	54.3
Zm00007a00031982	Zea mays B104	HOM04x5M000638	ORTHO04x5M000468	2.7e-11	71.2	73	50.7
OsR498G0510488000.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	3.5e-11	70.9	73	52.1
OsR498G0510222200.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	3.5e-11	70.9	73	50.7
Sspon.03G0044350-1C	Saccharum spontaneum	HOM04x5M000593	ORTHO04x5M000460	3.5e-11	70.9	66	54.5
TraesCS4A02G051800	Triticum aestivum	HOM04x5M000638	ORTHO04x5M000468	7.8e-11	69.7	69	49.3
TRITD4Av1G019000	Triticum turgidum	HOM04x5M000638	ORTHO04x5M000468	7.8e-11	69.7	69	49.3
TRITD7Bv1G016640	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.7e-10	68.6	69	50.7
OsR498G0917468300.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	2.3e-10	68.2	73	50.7
TraesCS5A02G267400	Triticum aestivum	HOM04x5M000209	ORTHO04x5M000158	2.3e-10	68.2	68	48.5
TraesCS5B02G348500	Triticum aestivum	HOM04x5M000209	ORTHO04x5M000158	2.3e-10	68.2	68	48.5
OB12G10590	Oryza brachyantha	HOM04x5M000209	ORTHO04x5M000158	3.9e-10	67.4	73	50.7
OsR498G0815724700.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	6.6e-10	66.6	71	47.9
TRITD3Bv1G056990	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	6.6e-10	66.6	70	50.0
TRITD3Av1G051650	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	6.6e-10	66.6	70	50.0
OsR498G0306621300.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	8.7e-10	66.2	69	44.9
OsR498G0611912900.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	8.7e-10	66.2	69	44.9
OsR498G0714419000.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	8.7e-10	66.2	69	44.9
OsR498G0917573300.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	8.7e-10	66.2	69	44.9
TraesCS6B02G145000	Triticum aestivum	HOM04x5M002579	ORTHO04x5M002914	8.7e-10	66.2	68	48.5
LP024186	Lolium perenne	HOM04x5M000209	ORTHO04x5M000158	1.1e-09	65.9	71	49.3
OsR498G0917812800.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.1e-09	65.9	69	44.9
OsR498G0100873700.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.5e-09	65.5	65	47.7
OsR498G0408012000.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.5e-09	65.5	65	47.7
OsR498G0408480400.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.5e-09	65.5	73	49.3
OsR498G0713894600.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.5e-09	65.5	65	47.7
TRITD5Av1G138950	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.5e-09	65.5	68	47.1
OsR498G1018228400.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.9e-09	65.1	71	46.5
OsR498G1220867000.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	2.5e-09	64.7	47	66.0
Zm00007a00000861	Zea mays B104	HOM04x5M002579	ORTHO04x5M002914	5.6e-09	63.5	68	45.6
OsR498G0917506100.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	7.3e-09	63.2	69	43.5
TRITD3Av1G269130	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	7.3e-09	63.2	73	47.9
TRITD2Av1G166880	Triticum turgidum	HOM04x5M002579	ORTHO04x5M002914	9.6e-09	62.8	68	47.1
TRITD2Bv1G130930	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	1.3e-08	62.4	73	47.9
OsR498G0203098800.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.6e-08	62.0	67	50.7
OsR498G0714416900.01	Oryza sativa ssp. indica	HOM04x5M000209	ORTHO04x5M000158	1.6e-08	62.0	67	47.8
TRITD7Av1G029760	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.8e-08	61.2	73	46.6
Zm00007a00044471	Zea mays B104	HOM04x5M000638	ORTHO04x5M000158	2.8e-08	61.2	73	49.3
TRITD6Av1G080520	Triticum turgidum	HOM04x5M002579	ORTHO04x5M002914	3.6e-08	60.8	68	45.6
Zm00007a00033912	Zea mays B104	HOM04x5M002579	ORTHO04x5M002914	6.2e-08	60.1	66	43.9
Zm00007a00026317	Zea mays B104	HOM04x5M000209	ORTHO04x5M000158	1.8e-07	58.5	66	43.9
HORVU1Hr1G034640	Hordeum vulgare	HOM04x5M000209	ORTHO04x5M000158	2.4e-07	58.2	47	63.8
TRITD5Av1G195320	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	4.0e-07	57.4	68	47.1
Zm00007a00011726	Zea mays B104	HOM04x5M000209	ORTHO04x5M000158	4.0e-07	57.4	71	42.3
Zm00007a00046083	Zea mays B104	HOM04x5M000904	ORTHO04x5M000712	6.9e-07	56.6	70	42.9
Zm00007a00006812	Zea mays B104	HOM04x5M000904	ORTHO04x5M000712	6.9e-07	56.6	70	42.9
Spipo3G0086900	Spirodela polyrhiza	HOM04x5M000209	ORTHO04x5M000158	9.0e-07	56.2	65	43.1
TRITD6Av1G056990	Triticum turgidum	HOM04x5M002579	ORTHO04x5M002914	1.5e-06	55.5	61	49.2
TRITD1Av1G188750	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.0e-06	55.1	71	40.8
TRITD3Bv1G196010	Triticum turgidum	HOM04x5M000209	ORTHO04x5M000158	2.6e-06	54.7	73	43.8
Zm00007a00018642	Zea mays B104	HOM04x5M000209	ORTHO04x5M000158	2.6e-06	54.7	63	47.6
Zm00007a00019878	Zea mays B104	HOM04x5M000209	ORTHO04x5M000158	9.9e-06	52.8	55	47.3

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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