Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00164G00010	Physcomitrella patens	0.0	1440	694	100.00
PP00015G00680	Physcomitrella patens	0.0	1338	694	93.66
PP00162G00740	Physcomitrella patens	0.0	997	701	70.19
PP00019G01110	Physcomitrella patens	0.0	988	705	69.65
PP00373G00150	Physcomitrella patens	0.0	983	705	68.51
PP00224G00220	Physcomitrella patens	0.0	953	702	66.52
PP00089G01080	Physcomitrella patens	0.0	941	704	67.33
ATR_00019G01680	Amborella trichopoda	0.0	910	701	64.91
ATR_00065G00270	Amborella trichopoda	0.0	905	725	64.69
AT4G31590	Arabidopsis thaliana	0.0	892	702	63.82
AT2G24630	Arabidopsis thaliana	0.0	880	704	62.78
OS08G15420	Oryza sativa	0.0	840	740	61.35
ATR_00013G02120	Amborella trichopoda	0.0	833	674	65.28
AT4G07960	Arabidopsis thaliana	0.0	828	719	61.89
AT3G07330	Arabidopsis thaliana	0.0	818	699	58.23
OS07G03260	Oryza sativa	0.0	818	689	63.13
AT3G28180	Arabidopsis thaliana	0.0	802	694	60.81
OS05G43530	Oryza sativa	0.0	800	683	62.96
OS01G56130	Oryza sativa	0.0	800	696	62.21
OS09G25900	Oryza sativa	0.0	768	695	60.58
OS03G56060	Oryza sativa	0.0	687	474	74.26
OS02G09930	Oryza sativa	4e-143	436	456	47.37
PP00065G00990	Physcomitrella patens	5e-143	436	543	41.44
PP00036G01070	Physcomitrella patens	1e-141	432	542	40.96
AT5G03760	Arabidopsis thaliana	2e-141	432	540	41.67
PP00036G00370	Physcomitrella patens	3e-141	431	543	41.25
ATR_00040G02570	Amborella trichopoda	1e-140	429	541	41.40
AT5G22740	Arabidopsis thaliana	6e-140	428	543	40.52
OS06G42020	Oryza sativa	3e-138	423	556	39.93
AT1G23480	Arabidopsis thaliana	4e-136	419	566	39.05
OS08G33740	Oryza sativa	3e-132	410	499	41.28
AT4G13410	Arabidopsis thaliana	6e-132	407	438	44.52
AT2G35650	Arabidopsis thaliana	1e-130	404	459	43.57
AT1G24070	Arabidopsis thaliana	1e-130	404	533	39.77
OS02G51060	Oryza sativa	7e-129	399	551	37.57
OS07G43710	Oryza sativa	6e-128	398	550	38.00
OS03G07350	Oryza sativa	3e-127	395	471	41.40
AT5G16190	Arabidopsis thaliana	1e-126	390	479	41.54
OS03G26044	Oryza sativa	2e-126	394	550	38.18
AT3G56000	Arabidopsis thaliana	7e-125	389	540	38.70
OS10G26630	Oryza sativa	2e-123	385	390	46.92
MP16G01280	Micromonas pusilla strain CCMP1545	2e-119	373	496	39.72
OM_17G00960	Ostreococcus mediterraneus	5e-119	375	546	36.81
MRCC299_10G04230	Micromonas sp RCC299	1e-117	369	518	38.42
HE0000G41170	Helicosporidium sp.	3e-113	361	542	37.82
BPRRCC1105_06G01240	Bathycoccus prasinos	7e-112	358	447	41.83
AP00G21430	Auxenochlorella protothecoides	1e-111	357	544	36.58
OT_17G00830	Ostreococcus tauri	2e-111	353	428	41.36
PI00G51280	Picochlorum sp. SENEW3 (SE3)	2e-111	357	422	41.23
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	2e-110	351	544	36.21
CV00G12800	Coccomyxa subellipsoidea C-169	2e-109	349	533	36.77
OL16G00900	Ostreococcus lucimarinus	2e-108	345	543	37.38
RCC4223.04g03450	Picochlorum_RCC4223	3e-108	349	441	39.68
ATR_00072G01360	Amborella trichopoda	1e-106	334	309	49.51
AT4G16590	Arabidopsis thaliana	1e-105	334	430	40.47
CV00G12810	Coccomyxa subellipsoidea C-169	3e-103	329	381	44.62
OS06G12460	Oryza sativa	6e-102	331	531	36.72
ORCC809_16G01780	Ostreococcus sp RCC809	1e-97	318	444	39.19
CNC64A_025G01180	Chlorella sp NC64A	3e-94	312	529	34.78
VC00G68920	Volvox carteri	1e-72	252	372	38.71
CR06G04470	Chlamydomonas reinhardtii	2e-71	251	378	38.89
OS09G26770	Oryza sativa	3e-60	216	346	36.71
emh181270	Emiliania huxleyi	3e-47	175	267	40.45
emh488170	Emiliania huxleyi	3e-47	175	267	40.45
OM_13G00450	Ostreococcus mediterraneus	3e-26	119	259	29.73
ORCC809_20G02860	Ostreococcus sp RCC809	1e-25	116	254	31.10
OT_14G02980	Ostreococcus tauri	9e-25	114	246	30.89
ATR_00067G00360	Amborella trichopoda	2e-23	101	131	56.49
OL20G02910	Ostreococcus lucimarinus	2e-22	107	251	29.48
ES0097G00210	Ectocarpus siliculosus	2e-18	94.4	299	29.10
ES0097G00300	Ectocarpus siliculosus	1e-17	91.7	303	29.70
OS11G13650	Oryza sativa	5e-17	85.5	219	31.96
DDB_G0269124	Dictyostelium discoideum	8e-16	85.9	262	29.77
ES0185G00090	Ectocarpus siliculosus	3e-15	84.3	345	28.41
ES0200G00060	Ectocarpus siliculosus	4e-15	83.2	243	30.04
Naga_100079g22	Nannochloropsis gaditana	2e-13	77.4	274	25.91
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	7e-13	75.9	338	26.63
ccr13740	Chondrus crispus	9e-13	75.5	320	25.31
emh647580	Emiliania huxleyi	3e-12	73.9	259	24.32
PP00372G00370	Physcomitrella patens	5e-12	73.2	255	26.67
ES0097G00120	Ectocarpus siliculosus	5e-12	73.2	202	31.19
PI00G46760	Picochlorum sp. SENEW3 (SE3)	1e-11	72.4	370	23.78
Naga_100049g27	Nannochloropsis gaditana	1e-11	72.0	255	23.92
RCC4223.10g01020	Picochlorum_RCC4223	3e-11	71.2	394	23.60
RCC4223.10g00870	Picochlorum_RCC4223	3e-09	64.7	342	24.56
CV00G83580	Coccomyxa subellipsoidea C-169	1e-08	62.8	276	24.64
PI00G34600	Picochlorum sp. SENEW3 (SE3)	1e-08	62.8	261	24.52
AP00G07320	Auxenochlorella protothecoides	3e-08	61.6	304	25.33
PI00G60790	Picochlorum sp. SENEW3 (SE3)	7e-08	60.1	420	21.67
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	2e-07	58.9	218	24.77
AC00G15120	Asterochloris sp. Cgr-DA1pho v2.0	6e-07	57.0	261	24.90
PP00168G00010	Physcomitrella patens	7e-07	52.4	55	43.64
CV00G40830	Coccomyxa subellipsoidea C-169	1e-06	55.8	350	22.57
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	2e-06	55.1	264	24.24
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	4e-06	54.3	350	21.43
OS10G25740	Oryza sativa	5e-06	50.8	82	35.37

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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