Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS09G25900	Oryza sativa	0.0	1436	699	100.00
ATR_00019G01680	Amborella trichopoda	0.0	994	694	71.04
AT4G31590	Arabidopsis thaliana	0.0	965	698	70.49
AT2G24630	Arabidopsis thaliana	0.0	955	700	68.43
OS08G15420	Oryza sativa	0.0	912	764	65.58
ATR_00065G00270	Amborella trichopoda	0.0	884	715	63.08
AT3G28180	Arabidopsis thaliana	0.0	883	694	63.69
PP00162G00740	Physcomitrella patens	0.0	866	703	63.16
PP00089G01080	Physcomitrella patens	0.0	855	699	61.66
PP00019G01110	Physcomitrella patens	0.0	852	704	62.07
PP00224G00220	Physcomitrella patens	0.0	852	694	61.53
AT4G07960	Arabidopsis thaliana	0.0	852	711	63.71
OS05G43530	Oryza sativa	0.0	843	684	64.47
OS07G03260	Oryza sativa	0.0	842	695	64.03
PP00015G00680	Physcomitrella patens	0.0	838	698	60.74
PP00373G00150	Physcomitrella patens	0.0	838	704	60.94
OS01G56130	Oryza sativa	0.0	830	699	63.52
AT3G07330	Arabidopsis thaliana	0.0	823	696	61.64
ATR_00013G02120	Amborella trichopoda	0.0	816	684	62.72
PP00164G00010	Physcomitrella patens	0.0	811	697	60.83
OS03G56060	Oryza sativa	0.0	730	466	77.90
ATR_00040G02570	Amborella trichopoda	4e-140	428	558	42.11
PP00036G01070	Physcomitrella patens	7e-140	428	533	40.71
PP00036G00370	Physcomitrella patens	1e-139	427	532	40.60
PP00065G00990	Physcomitrella patens	2e-139	427	533	40.53
AT5G03760	Arabidopsis thaliana	5e-137	420	535	41.87
OS02G09930	Oryza sativa	2e-136	418	535	40.00
AT5G22740	Arabidopsis thaliana	2e-135	416	534	40.82
OS06G42020	Oryza sativa	3e-133	410	474	43.25
AT1G23480	Arabidopsis thaliana	4e-131	406	450	46.00
AT4G13410	Arabidopsis thaliana	7e-131	404	542	38.56
AT2G35650	Arabidopsis thaliana	5e-130	403	439	46.24
OS08G33740	Oryza sativa	6e-130	404	491	41.55
OS07G43710	Oryza sativa	3e-129	402	539	39.70
AT1G24070	Arabidopsis thaliana	5e-129	400	528	40.34
OS03G07350	Oryza sativa	2e-127	396	471	41.40
AT5G16190	Arabidopsis thaliana	2e-127	392	463	42.55
OS02G51060	Oryza sativa	1e-124	388	520	39.81
OS03G26044	Oryza sativa	2e-124	389	469	43.92
AT3G56000	Arabidopsis thaliana	7e-124	386	436	44.95
OS10G26630	Oryza sativa	1e-120	377	470	41.28
MP16G01280	Micromonas pusilla strain CCMP1545	2e-119	373	463	41.90
OM_17G00960	Ostreococcus mediterraneus	1e-118	374	463	41.90
MRCC299_10G04230	Micromonas sp RCC299	2e-114	360	463	40.17
PI00G51280	Picochlorum sp. SENEW3 (SE3)	6e-113	361	524	35.69
OT_17G00830	Ostreococcus tauri	1e-111	354	433	42.49
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	2e-111	354	515	36.50
AP00G21430	Auxenochlorella protothecoides	2e-111	357	374	44.92
ATR_00072G01360	Amborella trichopoda	2e-110	344	309	52.75
RCC4223.04g03450	Picochlorum_RCC4223	2e-109	352	531	35.03
CV00G12800	Coccomyxa subellipsoidea C-169	9e-109	348	484	36.78
BPRRCC1105_06G01240	Bathycoccus prasinos	9e-109	350	463	39.96
HE0000G41170	Helicosporidium sp.	4e-108	348	439	41.00
OL16G00900	Ostreococcus lucimarinus	3e-107	342	520	37.69
AT4G16590	Arabidopsis thaliana	2e-106	336	424	40.57
CV00G12810	Coccomyxa subellipsoidea C-169	4e-106	337	367	44.41
OS06G12460	Oryza sativa	2e-104	338	415	42.17
ORCC809_16G01780	Ostreococcus sp RCC809	7e-101	327	525	35.81
CNC64A_025G01180	Chlorella sp NC64A	5e-87	293	438	36.53
VC00G68920	Volvox carteri	2e-70	246	376	37.77
CR06G04470	Chlamydomonas reinhardtii	2e-70	248	376	38.03
OS09G26770	Oryza sativa	2e-59	214	321	37.69
emh181270	Emiliania huxleyi	8e-49	179	248	42.34
emh488170	Emiliania huxleyi	8e-49	179	248	42.34
ATR_00067G00360	Amborella trichopoda	9e-34	130	124	61.29
OM_13G00450	Ostreococcus mediterraneus	2e-27	122	248	32.66
ORCC809_20G02860	Ostreococcus sp RCC809	4e-27	121	255	30.98
OT_14G02980	Ostreococcus tauri	5e-26	118	303	28.05
OL20G02910	Ostreococcus lucimarinus	2e-25	116	296	31.08
ES0097G00300	Ectocarpus siliculosus	3e-21	103	333	28.23
OS11G13650	Oryza sativa	1e-20	96.7	225	36.89
ES0097G00210	Ectocarpus siliculosus	1e-19	98.2	302	29.80
DDB_G0269124	Dictyostelium discoideum	8e-17	89.0	265	29.43
Naga_100079g22	Nannochloropsis gaditana	4e-16	86.3	282	26.60
Naga_100049g27	Nannochloropsis gaditana	4e-15	83.2	254	27.56
ES0200G00060	Ectocarpus siliculosus	1e-14	82.0	270	27.78
ES0097G00120	Ectocarpus siliculosus	6e-13	76.3	237	31.65
ES0185G00090	Ectocarpus siliculosus	8e-12	72.8	359	24.51
emh647580	Emiliania huxleyi	8e-12	72.8	249	26.10
PP00372G00370	Physcomitrella patens	5e-11	70.1	255	25.49
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	3e-10	67.8	305	25.25
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	3e-10	67.4	248	27.82
OS10G25740	Oryza sativa	3e-10	63.5	82	46.34
CV00G28250	Coccomyxa subellipsoidea C-169	4e-10	67.4	249	26.10
PI00G46760	Picochlorum sp. SENEW3 (SE3)	5e-10	67.0	219	24.66
RCC4223.10g00870	Picochlorum_RCC4223	7e-10	66.6	246	25.20
CV00G83580	Coccomyxa subellipsoidea C-169	9e-10	66.2	185	29.73
RCC4223.10g01020	Picochlorum_RCC4223	2e-09	65.5	253	23.72
CV00G13860	Coccomyxa subellipsoidea C-169	2e-09	65.1	249	25.70
AP00G07320	Auxenochlorella protothecoides	4e-09	64.3	246	23.17
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	9e-09	62.8	243	26.75
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	1e-08	62.8	245	26.53
ccr65060	Chondrus crispus	2e-08	62.4	187	26.74
CV00G01670	Coccomyxa subellipsoidea C-169	2e-08	61.6	171	26.32
CV00G40830	Coccomyxa subellipsoidea C-169	6e-07	57.0	293	23.55

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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