Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ORCC809_16G01780	Ostreococcus sp RCC809	0.0	1168	562	100.00
OL16G00900	Ostreococcus lucimarinus	0.0	717	512	67.77
OT_17G00830	Ostreococcus tauri	0.0	714	509	66.21
OM_17G00960	Ostreococcus mediterraneus	0.0	668	578	57.79
MP16G01280	Micromonas pusilla strain CCMP1545	0.0	548	488	55.74
MRCC299_10G04230	Micromonas sp RCC299	0.0	545	488	55.33
BPRRCC1105_06G01240	Bathycoccus prasinos	0.0	540	566	50.53
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	3e-143	431	499	44.69
CV00G12800	Coccomyxa subellipsoidea C-169	4e-143	432	480	46.25
PI00G51280	Picochlorum sp. SENEW3 (SE3)	9e-143	434	494	46.56
AP00G21430	Auxenochlorella protothecoides	1e-140	428	491	46.84
RCC4223.04g03450	Picochlorum_RCC4223	4e-140	427	502	45.82
CV00G12810	Coccomyxa subellipsoidea C-169	2e-130	395	441	47.39
HE0000G41170	Helicosporidium sp.	1e-129	400	490	43.27
ATR_00040G02570	Amborella trichopoda	4e-112	351	527	37.95
PP00065G00990	Physcomitrella patens	7e-112	351	522	36.59
OS06G42020	Oryza sativa	2e-111	349	522	36.02
CNC64A_025G01180	Chlorella sp NC64A	2e-110	350	500	41.00
PP00036G01070	Physcomitrella patens	4e-110	346	506	36.76
AT5G22740	Arabidopsis thaliana	5e-110	346	494	38.06
PP00036G00370	Physcomitrella patens	2e-109	344	522	35.82
AT5G03760	Arabidopsis thaliana	2e-108	342	504	36.31
AT1G23480	Arabidopsis thaliana	1e-107	340	520	36.35
OS07G43710	Oryza sativa	7e-107	339	514	36.38
AT1G24070	Arabidopsis thaliana	6e-106	336	517	37.33
AT2G35650	Arabidopsis thaliana	9e-106	335	485	36.29
PP00162G00740	Physcomitrella patens	1e-104	337	426	40.85
PP00373G00150	Physcomitrella patens	5e-104	335	443	39.73
OS03G26044	Oryza sativa	9e-104	331	508	36.42
PP00019G01110	Physcomitrella patens	2e-103	333	425	40.47
ATR_00019G01680	Amborella trichopoda	1e-102	331	427	40.98
AT4G13410	Arabidopsis thaliana	4e-102	325	521	35.70
OS07G03260	Oryza sativa	4e-102	330	450	40.44
ATR_00065G00270	Amborella trichopoda	1e-101	329	428	40.65
AT4G31590	Arabidopsis thaliana	5e-101	327	448	38.39
PP00224G00220	Physcomitrella patens	1e-100	326	424	39.39
AT3G28180	Arabidopsis thaliana	1e-100	325	425	40.24
OS02G51060	Oryza sativa	2e-100	321	499	37.47
OS02G09930	Oryza sativa	2e-100	320	504	36.51
OS03G07350	Oryza sativa	2e-100	321	437	38.44
AT4G07960	Arabidopsis thaliana	4e-99	322	520	37.12
AT2G24630	Arabidopsis thaliana	5e-99	322	426	38.50
OS09G25900	Oryza sativa	1e-97	318	425	40.00
AT5G16190	Arabidopsis thaliana	2e-97	310	441	39.68
OS03G56060	Oryza sativa	6e-97	309	360	43.61
OS08G33740	Oryza sativa	6e-97	313	475	37.68
OS10G26630	Oryza sativa	6e-97	311	436	39.45
PP00089G01080	Physcomitrella patens	2e-96	315	427	39.81
OS05G43530	Oryza sativa	3e-96	314	520	36.15
OS01G56130	Oryza sativa	4e-96	314	524	35.69
PP00015G00680	Physcomitrella patens	6e-95	311	444	38.51
AT3G56000	Arabidopsis thaliana	9e-95	306	512	33.98
AT3G07330	Arabidopsis thaliana	2e-94	310	426	38.73
ATR_00013G02120	Amborella trichopoda	4e-94	308	424	39.15
OS08G15420	Oryza sativa	1e-93	309	429	38.23
PP00164G00010	Physcomitrella patens	3e-92	304	444	39.19
AT4G16590	Arabidopsis thaliana	8e-92	294	394	39.85
OS06G12460	Oryza sativa	1e-84	282	384	38.28
ATR_00072G01360	Amborella trichopoda	7e-82	266	287	42.86
VC00G68920	Volvox carteri	7e-77	260	410	38.29
CR06G04470	Chlamydomonas reinhardtii	1e-74	256	403	39.45
OS09G26770	Oryza sativa	3e-48	180	338	33.14
emh181270	Emiliania huxleyi	3e-43	162	256	41.02
emh488170	Emiliania huxleyi	3e-43	162	256	41.02
OM_13G00450	Ostreococcus mediterraneus	2e-23	108	332	27.41
ORCC809_20G02860	Ostreococcus sp RCC809	4e-22	105	276	28.62
OL20G02910	Ostreococcus lucimarinus	9e-21	100	248	30.24
OT_14G02980	Ostreococcus tauri	2e-19	96.3	255	30.20
ES0097G00300	Ectocarpus siliculosus	1e-13	78.2	324	26.23
Naga_100049g27	Nannochloropsis gaditana	3e-13	76.6	289	25.61
ES0200G00060	Ectocarpus siliculosus	8e-13	75.1	292	29.45
ES0097G00210	Ectocarpus siliculosus	2e-12	74.7	320	26.88
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	7e-12	72.0	254	27.56
PP00372G00370	Physcomitrella patens	3e-11	70.5	293	24.57
CV00G28250	Coccomyxa subellipsoidea C-169	9e-11	68.9	339	25.66
RCC4223.10g01020	Picochlorum_RCC4223	3e-10	67.4	313	24.28
CV00G13860	Coccomyxa subellipsoidea C-169	3e-10	67.4	338	25.74
PI00G46760	Picochlorum sp. SENEW3 (SE3)	1e-09	65.5	284	23.94
ES0185G00090	Ectocarpus siliculosus	2e-09	64.7	383	24.80
DDB_G0269124	Dictyostelium discoideum	2e-09	64.3	175	25.14
AP00G07320	Auxenochlorella protothecoides	4e-09	63.9	330	26.06
ccr13740	Chondrus crispus	6e-09	63.2	251	23.90
PI00G60790	Picochlorum sp. SENEW3 (SE3)	2e-08	61.6	407	23.10
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	2e-08	61.2	299	23.41
AC00G54710	Asterochloris sp. Cgr-DA1pho v2.0	6e-08	60.1	334	23.05
CV00G01670	Coccomyxa subellipsoidea C-169	1e-07	58.9	237	26.16
emh647580	Emiliania huxleyi	2e-07	58.2	250	24.40
ccr65060	Chondrus crispus	4e-07	57.0	191	26.18
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	4e-06	54.3	311	22.83

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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