Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: OM_18G01010

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'OM_18G01010' => array(
			'gene_id' => 'OM_18G01010',
			'e_value' => '0.0',
			'bit_score' => '2803',
			'alignment_length' => '1373',
			'identity_percentage' => '100.00',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL17G01190' => array(
			'gene_id' => 'OL17G01190',
			'e_value' => '0.0',
			'bit_score' => '1328',
			'alignment_length' => '1362',
			'identity_percentage' => '53.23',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_18G01170' => array(
			'gene_id' => 'OT_18G01170',
			'e_value' => '0.0',
			'bit_score' => '1248',
			'alignment_length' => '1344',
			'identity_percentage' => '50.07',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_17G01190' => array(
			'gene_id' => 'ORCC809_17G01190',
			'e_value' => '0.0',
			'bit_score' => '1205',
			'alignment_length' => '1406',
			'identity_percentage' => '49.57',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_03G08000' => array(
			'gene_id' => 'MRCC299_03G08000',
			'e_value' => '1e-101',
			'bit_score' => '360',
			'alignment_length' => '1529',
			'identity_percentage' => '28.12',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00270G00460' => array(
			'gene_id' => 'PP00270G00460',
			'e_value' => '4e-82',
			'bit_score' => '300',
			'alignment_length' => '1340',
			'identity_percentage' => '24.93',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00030G00120' => array(
			'gene_id' => 'ATR_00030G00120',
			'e_value' => '7e-80',
			'bit_score' => '293',
			'alignment_length' => '940',
			'identity_percentage' => '24.89',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP17G02120' => array(
			'gene_id' => 'MP17G02120',
			'e_value' => '3e-78',
			'bit_score' => '289',
			'alignment_length' => '938',
			'identity_percentage' => '31.56',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G16280' => array(
			'gene_id' => 'AT5G16280',
			'e_value' => '5e-77',
			'bit_score' => '283',
			'alignment_length' => '1256',
			'identity_percentage' => '23.65',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G57300' => array(
			'gene_id' => 'OS03G57300',
			'e_value' => '1e-72',
			'bit_score' => '270',
			'alignment_length' => '1281',
			'identity_percentage' => '22.95',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_09G00820' => array(
			'gene_id' => 'BPRRCC1105_09G00820',
			'e_value' => '1e-64',
			'bit_score' => '246',
			'alignment_length' => '831',
			'identity_percentage' => '28.28',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G05540' => array(
			'gene_id' => 'CV00G05540',
			'e_value' => '8e-64',
			'bit_score' => '243',
			'alignment_length' => '1400',
			'identity_percentage' => '24.21',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR01G05390' => array(
			'gene_id' => 'CR01G05390',
			'e_value' => '9e-63',
			'bit_score' => '240',
			'alignment_length' => '810',
			'identity_percentage' => '28.02',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G45660' => array(
			'gene_id' => 'VC00G45660',
			'e_value' => '6e-60',
			'bit_score' => '231',
			'alignment_length' => '900',
			'identity_percentage' => '26.00',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G45200' => array(
			'gene_id' => 'AC00G45200',
			'e_value' => '1e-59',
			'bit_score' => '226',
			'alignment_length' => '873',
			'identity_percentage' => '27.49',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs344240' => array(
			'gene_id' => 'phs344240',
			'e_value' => '1e-40',
			'bit_score' => '168',
			'alignment_length' => '659',
			'identity_percentage' => '25.19',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000033382' => array(
			'gene_id' => 'ENSMUSG00000033382',
			'e_value' => '1e-39',
			'bit_score' => '165',
			'alignment_length' => '766',
			'identity_percentage' => '23.63',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G00300' => array(
			'gene_id' => 'CNC64A_003G00300',
			'e_value' => '6e-38',
			'bit_score' => '158',
			'alignment_length' => '865',
			'identity_percentage' => '23.93',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000153339' => array(
			'gene_id' => 'ENSG00000153339',
			'e_value' => '1e-37',
			'bit_score' => '158',
			'alignment_length' => '813',
			'identity_percentage' => '23.25',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G00260' => array(
			'gene_id' => 'CNC64A_003G00260',
			'e_value' => '1e-36',
			'bit_score' => '153',
			'alignment_length' => '717',
			'identity_percentage' => '25.10',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0260655' => array(
			'gene_id' => 'FBgn0260655',
			'e_value' => '3e-36',
			'bit_score' => '154',
			'alignment_length' => '546',
			'identity_percentage' => '26.74',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G14610' => array(
			'gene_id' => 'PI00G14610',
			'e_value' => '6e-35',
			'bit_score' => '149',
			'alignment_length' => '512',
			'identity_percentage' => '24.80',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.05g02320' => array(
			'gene_id' => 'RCC4223.05g02320',
			'e_value' => '9e-35',
			'bit_score' => '149',
			'alignment_length' => '587',
			'identity_percentage' => '23.68',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100001g67' => array(
			'gene_id' => 'Naga_100001g67',
			'e_value' => '1e-27',
			'bit_score' => '126',
			'alignment_length' => '446',
			'identity_percentage' => '26.91',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0292682' => array(
			'gene_id' => 'DDB_G0292682',
			'e_value' => '6e-25',
			'bit_score' => '117',
			'alignment_length' => '752',
			'identity_percentage' => '21.68',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G64240' => array(
			'gene_id' => 'AP00G64240',
			'e_value' => '4e-20',
			'bit_score' => '101',
			'alignment_length' => '377',
			'identity_percentage' => '25.99',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_21G02570' => array(
			'gene_id' => 'PTI_21G02570',
			'e_value' => '5e-19',
			'bit_score' => '98.2',
			'alignment_length' => '321',
			'identity_percentage' => '26.79',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC003G09000' => array(
			'gene_id' => 'FC003G09000',
			'e_value' => '5e-17',
			'bit_score' => '91.7',
			'alignment_length' => '326',
			'identity_percentage' => '25.15',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00018512' => array(
			'gene_id' => 'WBGene00018512',
			'e_value' => '2e-13',
			'bit_score' => '79.7',
			'alignment_length' => '549',
			'identity_percentage' => '22.59',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0205G00170' => array(
			'gene_id' => 'ES0205G00170',
			'e_value' => '2e-10',
			'bit_score' => '68.9',
			'alignment_length' => '265',
			'identity_percentage' => '24.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte467840' => array(
			'gene_id' => 'pte467840',
			'e_value' => '4e-08',
			'bit_score' => '62.4',
			'alignment_length' => '525',
			'identity_percentage' => '18.48',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_094G00020' => array(
			'gene_id' => 'CNC64A_094G00020',
			'e_value' => '1e-07',
			'bit_score' => '59.3',
			'alignment_length' => '180',
			'identity_percentage' => '24.44',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0024G00080' => array(
			'gene_id' => 'AA0024G00080',
			'e_value' => '7e-07',
			'bit_score' => '58.2',
			'alignment_length' => '112',
			'identity_percentage' => '32.14',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0026G00250' => array(
			'gene_id' => 'AA0026G00250',
			'e_value' => '9e-07',
			'bit_score' => '58.2',
			'alignment_length' => '112',
			'identity_percentage' => '32.14',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ome' => array(
			(int) 0 => 'OM_18G01010'
		),
		'olu' => array(
			(int) 0 => 'OL17G01190'
		),
		'ota' => array(
			(int) 0 => 'OT_18G01170'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_17G01190'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_03G08000'
		),
		'ppa' => array(
			(int) 0 => 'PP00270G00460'
		),
		'atr' => array(
			(int) 0 => 'ATR_00030G00120'
		),
		'mpu' => array(
			(int) 0 => 'MP17G02120'
		),
		'ath' => array(
			(int) 0 => 'AT5G16280'
		),
		'osa' => array(
			(int) 0 => 'OS03G57300'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_09G00820'
		),
		'cvu' => array(
			(int) 0 => 'CV00G05540'
		),
		'cre' => array(
			(int) 0 => 'CR01G05390'
		),
		'vca' => array(
			(int) 0 => 'VC00G45660'
		),
		'acg' => array(
			(int) 0 => 'AC00G45200'
		),
		'phs' => array(
			(int) 0 => 'phs344240'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000033382'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_003G00300',
			(int) 1 => 'CNC64A_003G00260'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000153339'
		),
		'drm' => array(
			(int) 0 => 'FBgn0260655'
		),
		'pse3' => array(
			(int) 0 => 'PI00G14610'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.05g02320'
		),
		'nga' => array(
			(int) 0 => 'Naga_100001g67'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0292682'
		),
		'apr' => array(
			(int) 0 => 'AP00G64240'
		),
		'ptri' => array(
			(int) 0 => 'PTI_21G02570'
		),
		'fcy' => array(
			(int) 0 => 'FC003G09000'
		),
		'cel' => array(
			(int) 0 => 'WBGene00018512'
		),
		'esi' => array(
			(int) 0 => 'ES0205G00170'
		),
		'pte' => array(
			(int) 0 => 'pte467840'
		),
		'aan' => array(
			(int) 0 => 'AA0024G00080',
			(int) 1 => 'AA0026G00250'
		)
	),
	'gene_id' => 'OM_18G01010',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'OM_18G01010',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'OT_08G03260',
	'gf_placeholder' => 'HOM03P022148',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'OM_18G01010' => array(
		'gene_id' => 'OM_18G01010',
		'e_value' => '0.0',
		'bit_score' => '2803',
		'alignment_length' => '1373',
		'identity_percentage' => '100.00',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OL17G01190' => array(
		'gene_id' => 'OL17G01190',
		'e_value' => '0.0',
		'bit_score' => '1328',
		'alignment_length' => '1362',
		'identity_percentage' => '53.23',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OT_18G01170' => array(
		'gene_id' => 'OT_18G01170',
		'e_value' => '0.0',
		'bit_score' => '1248',
		'alignment_length' => '1344',
		'identity_percentage' => '50.07',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ORCC809_17G01190' => array(
		'gene_id' => 'ORCC809_17G01190',
		'e_value' => '0.0',
		'bit_score' => '1205',
		'alignment_length' => '1406',
		'identity_percentage' => '49.57',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'MRCC299_03G08000' => array(
		'gene_id' => 'MRCC299_03G08000',
		'e_value' => '1e-101',
		'bit_score' => '360',
		'alignment_length' => '1529',
		'identity_percentage' => '28.12',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PP00270G00460' => array(
		'gene_id' => 'PP00270G00460',
		'e_value' => '4e-82',
		'bit_score' => '300',
		'alignment_length' => '1340',
		'identity_percentage' => '24.93',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ATR_00030G00120' => array(
		'gene_id' => 'ATR_00030G00120',
		'e_value' => '7e-80',
		'bit_score' => '293',
		'alignment_length' => '940',
		'identity_percentage' => '24.89',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'MP17G02120' => array(
		'gene_id' => 'MP17G02120',
		'e_value' => '3e-78',
		'bit_score' => '289',
		'alignment_length' => '938',
		'identity_percentage' => '31.56',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AT5G16280' => array(
		'gene_id' => 'AT5G16280',
		'e_value' => '5e-77',
		'bit_score' => '283',
		'alignment_length' => '1256',
		'identity_percentage' => '23.65',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OS03G57300' => array(
		'gene_id' => 'OS03G57300',
		'e_value' => '1e-72',
		'bit_score' => '270',
		'alignment_length' => '1281',
		'identity_percentage' => '22.95',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'BPRRCC1105_09G00820' => array(
		'gene_id' => 'BPRRCC1105_09G00820',
		'e_value' => '1e-64',
		'bit_score' => '246',
		'alignment_length' => '831',
		'identity_percentage' => '28.28',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CV00G05540' => array(
		'gene_id' => 'CV00G05540',
		'e_value' => '8e-64',
		'bit_score' => '243',
		'alignment_length' => '1400',
		'identity_percentage' => '24.21',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CR01G05390' => array(
		'gene_id' => 'CR01G05390',
		'e_value' => '9e-63',
		'bit_score' => '240',
		'alignment_length' => '810',
		'identity_percentage' => '28.02',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'VC00G45660' => array(
		'gene_id' => 'VC00G45660',
		'e_value' => '6e-60',
		'bit_score' => '231',
		'alignment_length' => '900',
		'identity_percentage' => '26.00',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AC00G45200' => array(
		'gene_id' => 'AC00G45200',
		'e_value' => '1e-59',
		'bit_score' => '226',
		'alignment_length' => '873',
		'identity_percentage' => '27.49',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'phs344240' => array(
		'gene_id' => 'phs344240',
		'e_value' => '1e-40',
		'bit_score' => '168',
		'alignment_length' => '659',
		'identity_percentage' => '25.19',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ENSMUSG00000033382' => array(
		'gene_id' => 'ENSMUSG00000033382',
		'e_value' => '1e-39',
		'bit_score' => '165',
		'alignment_length' => '766',
		'identity_percentage' => '23.63',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CNC64A_003G00300' => array(
		'gene_id' => 'CNC64A_003G00300',
		'e_value' => '6e-38',
		'bit_score' => '158',
		'alignment_length' => '865',
		'identity_percentage' => '23.93',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ENSG00000153339' => array(
		'gene_id' => 'ENSG00000153339',
		'e_value' => '1e-37',
		'bit_score' => '158',
		'alignment_length' => '813',
		'identity_percentage' => '23.25',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CNC64A_003G00260' => array(
		'gene_id' => 'CNC64A_003G00260',
		'e_value' => '1e-36',
		'bit_score' => '153',
		'alignment_length' => '717',
		'identity_percentage' => '25.10',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'FBgn0260655' => array(
		'gene_id' => 'FBgn0260655',
		'e_value' => '3e-36',
		'bit_score' => '154',
		'alignment_length' => '546',
		'identity_percentage' => '26.74',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PI00G14610' => array(
		'gene_id' => 'PI00G14610',
		'e_value' => '6e-35',
		'bit_score' => '149',
		'alignment_length' => '512',
		'identity_percentage' => '24.80',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'RCC4223.05g02320' => array(
		'gene_id' => 'RCC4223.05g02320',
		'e_value' => '9e-35',
		'bit_score' => '149',
		'alignment_length' => '587',
		'identity_percentage' => '23.68',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'Naga_100001g67' => array(
		'gene_id' => 'Naga_100001g67',
		'e_value' => '1e-27',
		'bit_score' => '126',
		'alignment_length' => '446',
		'identity_percentage' => '26.91',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'DDB_G0292682' => array(
		'gene_id' => 'DDB_G0292682',
		'e_value' => '6e-25',
		'bit_score' => '117',
		'alignment_length' => '752',
		'identity_percentage' => '21.68',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AP00G64240' => array(
		'gene_id' => 'AP00G64240',
		'e_value' => '4e-20',
		'bit_score' => '101',
		'alignment_length' => '377',
		'identity_percentage' => '25.99',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PTI_21G02570' => array(
		'gene_id' => 'PTI_21G02570',
		'e_value' => '5e-19',
		'bit_score' => '98.2',
		'alignment_length' => '321',
		'identity_percentage' => '26.79',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'FC003G09000' => array(
		'gene_id' => 'FC003G09000',
		'e_value' => '5e-17',
		'bit_score' => '91.7',
		'alignment_length' => '326',
		'identity_percentage' => '25.15',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'WBGene00018512' => array(
		'gene_id' => 'WBGene00018512',
		'e_value' => '2e-13',
		'bit_score' => '79.7',
		'alignment_length' => '549',
		'identity_percentage' => '22.59',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ES0205G00170' => array(
		'gene_id' => 'ES0205G00170',
		'e_value' => '2e-10',
		'bit_score' => '68.9',
		'alignment_length' => '265',
		'identity_percentage' => '24.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	),
	'pte467840' => array(
		'gene_id' => 'pte467840',
		'e_value' => '4e-08',
		'bit_score' => '62.4',
		'alignment_length' => '525',
		'identity_percentage' => '18.48',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P036772',
			'ORTHOFAM' => 'ORTHO03P046475'
		)
	),
	'CNC64A_094G00020' => array(
		'gene_id' => 'CNC64A_094G00020',
		'e_value' => '1e-07',
		'bit_score' => '59.3',
		'alignment_length' => '180',
		'identity_percentage' => '24.44',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AA0024G00080' => array(
		'gene_id' => 'AA0024G00080',
		'e_value' => '7e-07',
		'bit_score' => '58.2',
		'alignment_length' => '112',
		'identity_percentage' => '32.14',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P034960',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	),
	'AA0026G00250' => array(
		'gene_id' => 'AA0026G00250',
		'e_value' => '9e-07',
		'bit_score' => '58.2',
		'alignment_length' => '112',
		'identity_percentage' => '32.14',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P034960',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	)
)
$similarity_hits_species = array(
	'ome' => array(
		(int) 0 => 'OM_18G01010'
	),
	'olu' => array(
		(int) 0 => 'OL17G01190'
	),
	'ota' => array(
		(int) 0 => 'OT_18G01170'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_17G01190'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_03G08000'
	),
	'ppa' => array(
		(int) 0 => 'PP00270G00460'
	),
	'atr' => array(
		(int) 0 => 'ATR_00030G00120'
	),
	'mpu' => array(
		(int) 0 => 'MP17G02120'
	),
	'ath' => array(
		(int) 0 => 'AT5G16280'
	),
	'osa' => array(
		(int) 0 => 'OS03G57300'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_09G00820'
	),
	'cvu' => array(
		(int) 0 => 'CV00G05540'
	),
	'cre' => array(
		(int) 0 => 'CR01G05390'
	),
	'vca' => array(
		(int) 0 => 'VC00G45660'
	),
	'acg' => array(
		(int) 0 => 'AC00G45200'
	),
	'phs' => array(
		(int) 0 => 'phs344240'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000033382'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_003G00300',
		(int) 1 => 'CNC64A_003G00260'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000153339'
	),
	'drm' => array(
		(int) 0 => 'FBgn0260655'
	),
	'pse3' => array(
		(int) 0 => 'PI00G14610'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.05g02320'
	),
	'nga' => array(
		(int) 0 => 'Naga_100001g67'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0292682'
	),
	'apr' => array(
		(int) 0 => 'AP00G64240'
	),
	'ptri' => array(
		(int) 0 => 'PTI_21G02570'
	),
	'fcy' => array(
		(int) 0 => 'FC003G09000'
	),
	'cel' => array(
		(int) 0 => 'WBGene00018512'
	),
	'esi' => array(
		(int) 0 => 'ES0205G00170'
	),
	'pte' => array(
		(int) 0 => 'pte467840'
	),
	'aan' => array(
		(int) 0 => 'AA0024G00080',
		(int) 1 => 'AA0026G00250'
	)
)
$gene_id = 'OM_18G01010'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'OM_18G01010'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OT_08G03260'
$gf_placeholder = 'HOM03P022148'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_094G00020',
	'e_value' => '1e-07',
	'bit_score' => '59.3',
	'alignment_length' => '180',
	'identity_percentage' => '24.44',
	'gf' => array(
		'HOMFAM' => 'HOM03P002585',
		'ORTHOFAM' => 'ORTHO03P002556'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_094G00020'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'OM_18G01010' => array(
			'gene_id' => 'OM_18G01010',
			'e_value' => '0.0',
			'bit_score' => '2803',
			'alignment_length' => '1373',
			'identity_percentage' => '100.00',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL17G01190' => array(
			'gene_id' => 'OL17G01190',
			'e_value' => '0.0',
			'bit_score' => '1328',
			'alignment_length' => '1362',
			'identity_percentage' => '53.23',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_18G01170' => array(
			'gene_id' => 'OT_18G01170',
			'e_value' => '0.0',
			'bit_score' => '1248',
			'alignment_length' => '1344',
			'identity_percentage' => '50.07',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_17G01190' => array(
			'gene_id' => 'ORCC809_17G01190',
			'e_value' => '0.0',
			'bit_score' => '1205',
			'alignment_length' => '1406',
			'identity_percentage' => '49.57',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_03G08000' => array(
			'gene_id' => 'MRCC299_03G08000',
			'e_value' => '1e-101',
			'bit_score' => '360',
			'alignment_length' => '1529',
			'identity_percentage' => '28.12',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00270G00460' => array(
			'gene_id' => 'PP00270G00460',
			'e_value' => '4e-82',
			'bit_score' => '300',
			'alignment_length' => '1340',
			'identity_percentage' => '24.93',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00030G00120' => array(
			'gene_id' => 'ATR_00030G00120',
			'e_value' => '7e-80',
			'bit_score' => '293',
			'alignment_length' => '940',
			'identity_percentage' => '24.89',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP17G02120' => array(
			'gene_id' => 'MP17G02120',
			'e_value' => '3e-78',
			'bit_score' => '289',
			'alignment_length' => '938',
			'identity_percentage' => '31.56',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G16280' => array(
			'gene_id' => 'AT5G16280',
			'e_value' => '5e-77',
			'bit_score' => '283',
			'alignment_length' => '1256',
			'identity_percentage' => '23.65',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G57300' => array(
			'gene_id' => 'OS03G57300',
			'e_value' => '1e-72',
			'bit_score' => '270',
			'alignment_length' => '1281',
			'identity_percentage' => '22.95',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_09G00820' => array(
			'gene_id' => 'BPRRCC1105_09G00820',
			'e_value' => '1e-64',
			'bit_score' => '246',
			'alignment_length' => '831',
			'identity_percentage' => '28.28',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G05540' => array(
			'gene_id' => 'CV00G05540',
			'e_value' => '8e-64',
			'bit_score' => '243',
			'alignment_length' => '1400',
			'identity_percentage' => '24.21',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR01G05390' => array(
			'gene_id' => 'CR01G05390',
			'e_value' => '9e-63',
			'bit_score' => '240',
			'alignment_length' => '810',
			'identity_percentage' => '28.02',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G45660' => array(
			'gene_id' => 'VC00G45660',
			'e_value' => '6e-60',
			'bit_score' => '231',
			'alignment_length' => '900',
			'identity_percentage' => '26.00',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G45200' => array(
			'gene_id' => 'AC00G45200',
			'e_value' => '1e-59',
			'bit_score' => '226',
			'alignment_length' => '873',
			'identity_percentage' => '27.49',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs344240' => array(
			'gene_id' => 'phs344240',
			'e_value' => '1e-40',
			'bit_score' => '168',
			'alignment_length' => '659',
			'identity_percentage' => '25.19',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000033382' => array(
			'gene_id' => 'ENSMUSG00000033382',
			'e_value' => '1e-39',
			'bit_score' => '165',
			'alignment_length' => '766',
			'identity_percentage' => '23.63',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G00300' => array(
			'gene_id' => 'CNC64A_003G00300',
			'e_value' => '6e-38',
			'bit_score' => '158',
			'alignment_length' => '865',
			'identity_percentage' => '23.93',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000153339' => array(
			'gene_id' => 'ENSG00000153339',
			'e_value' => '1e-37',
			'bit_score' => '158',
			'alignment_length' => '813',
			'identity_percentage' => '23.25',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G00260' => array(
			'gene_id' => 'CNC64A_003G00260',
			'e_value' => '1e-36',
			'bit_score' => '153',
			'alignment_length' => '717',
			'identity_percentage' => '25.10',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0260655' => array(
			'gene_id' => 'FBgn0260655',
			'e_value' => '3e-36',
			'bit_score' => '154',
			'alignment_length' => '546',
			'identity_percentage' => '26.74',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G14610' => array(
			'gene_id' => 'PI00G14610',
			'e_value' => '6e-35',
			'bit_score' => '149',
			'alignment_length' => '512',
			'identity_percentage' => '24.80',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.05g02320' => array(
			'gene_id' => 'RCC4223.05g02320',
			'e_value' => '9e-35',
			'bit_score' => '149',
			'alignment_length' => '587',
			'identity_percentage' => '23.68',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100001g67' => array(
			'gene_id' => 'Naga_100001g67',
			'e_value' => '1e-27',
			'bit_score' => '126',
			'alignment_length' => '446',
			'identity_percentage' => '26.91',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0292682' => array(
			'gene_id' => 'DDB_G0292682',
			'e_value' => '6e-25',
			'bit_score' => '117',
			'alignment_length' => '752',
			'identity_percentage' => '21.68',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G64240' => array(
			'gene_id' => 'AP00G64240',
			'e_value' => '4e-20',
			'bit_score' => '101',
			'alignment_length' => '377',
			'identity_percentage' => '25.99',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_21G02570' => array(
			'gene_id' => 'PTI_21G02570',
			'e_value' => '5e-19',
			'bit_score' => '98.2',
			'alignment_length' => '321',
			'identity_percentage' => '26.79',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC003G09000' => array(
			'gene_id' => 'FC003G09000',
			'e_value' => '5e-17',
			'bit_score' => '91.7',
			'alignment_length' => '326',
			'identity_percentage' => '25.15',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00018512' => array(
			'gene_id' => 'WBGene00018512',
			'e_value' => '2e-13',
			'bit_score' => '79.7',
			'alignment_length' => '549',
			'identity_percentage' => '22.59',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0205G00170' => array(
			'gene_id' => 'ES0205G00170',
			'e_value' => '2e-10',
			'bit_score' => '68.9',
			'alignment_length' => '265',
			'identity_percentage' => '24.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte467840' => array(
			'gene_id' => 'pte467840',
			'e_value' => '4e-08',
			'bit_score' => '62.4',
			'alignment_length' => '525',
			'identity_percentage' => '18.48',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_094G00020' => array(
			'gene_id' => 'CNC64A_094G00020',
			'e_value' => '1e-07',
			'bit_score' => '59.3',
			'alignment_length' => '180',
			'identity_percentage' => '24.44',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0024G00080' => array(
			'gene_id' => 'AA0024G00080',
			'e_value' => '7e-07',
			'bit_score' => '58.2',
			'alignment_length' => '112',
			'identity_percentage' => '32.14',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0026G00250' => array(
			'gene_id' => 'AA0026G00250',
			'e_value' => '9e-07',
			'bit_score' => '58.2',
			'alignment_length' => '112',
			'identity_percentage' => '32.14',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ome' => array(
			(int) 0 => 'OM_18G01010'
		),
		'olu' => array(
			(int) 0 => 'OL17G01190'
		),
		'ota' => array(
			(int) 0 => 'OT_18G01170'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_17G01190'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_03G08000'
		),
		'ppa' => array(
			(int) 0 => 'PP00270G00460'
		),
		'atr' => array(
			(int) 0 => 'ATR_00030G00120'
		),
		'mpu' => array(
			(int) 0 => 'MP17G02120'
		),
		'ath' => array(
			(int) 0 => 'AT5G16280'
		),
		'osa' => array(
			(int) 0 => 'OS03G57300'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_09G00820'
		),
		'cvu' => array(
			(int) 0 => 'CV00G05540'
		),
		'cre' => array(
			(int) 0 => 'CR01G05390'
		),
		'vca' => array(
			(int) 0 => 'VC00G45660'
		),
		'acg' => array(
			(int) 0 => 'AC00G45200'
		),
		'phs' => array(
			(int) 0 => 'phs344240'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000033382'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_003G00300',
			(int) 1 => 'CNC64A_003G00260'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000153339'
		),
		'drm' => array(
			(int) 0 => 'FBgn0260655'
		),
		'pse3' => array(
			(int) 0 => 'PI00G14610'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.05g02320'
		),
		'nga' => array(
			(int) 0 => 'Naga_100001g67'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0292682'
		),
		'apr' => array(
			(int) 0 => 'AP00G64240'
		),
		'ptri' => array(
			(int) 0 => 'PTI_21G02570'
		),
		'fcy' => array(
			(int) 0 => 'FC003G09000'
		),
		'cel' => array(
			(int) 0 => 'WBGene00018512'
		),
		'esi' => array(
			(int) 0 => 'ES0205G00170'
		),
		'pte' => array(
			(int) 0 => 'pte467840'
		),
		'aan' => array(
			(int) 0 => 'AA0024G00080',
			(int) 1 => 'AA0026G00250'
		)
	),
	'gene_id' => 'OM_18G01010',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'OM_18G01010',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'OT_08G03260',
	'gf_placeholder' => 'HOM03P022148',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'OM_18G01010' => array(
		'gene_id' => 'OM_18G01010',
		'e_value' => '0.0',
		'bit_score' => '2803',
		'alignment_length' => '1373',
		'identity_percentage' => '100.00',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OL17G01190' => array(
		'gene_id' => 'OL17G01190',
		'e_value' => '0.0',
		'bit_score' => '1328',
		'alignment_length' => '1362',
		'identity_percentage' => '53.23',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OT_18G01170' => array(
		'gene_id' => 'OT_18G01170',
		'e_value' => '0.0',
		'bit_score' => '1248',
		'alignment_length' => '1344',
		'identity_percentage' => '50.07',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ORCC809_17G01190' => array(
		'gene_id' => 'ORCC809_17G01190',
		'e_value' => '0.0',
		'bit_score' => '1205',
		'alignment_length' => '1406',
		'identity_percentage' => '49.57',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'MRCC299_03G08000' => array(
		'gene_id' => 'MRCC299_03G08000',
		'e_value' => '1e-101',
		'bit_score' => '360',
		'alignment_length' => '1529',
		'identity_percentage' => '28.12',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PP00270G00460' => array(
		'gene_id' => 'PP00270G00460',
		'e_value' => '4e-82',
		'bit_score' => '300',
		'alignment_length' => '1340',
		'identity_percentage' => '24.93',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ATR_00030G00120' => array(
		'gene_id' => 'ATR_00030G00120',
		'e_value' => '7e-80',
		'bit_score' => '293',
		'alignment_length' => '940',
		'identity_percentage' => '24.89',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'MP17G02120' => array(
		'gene_id' => 'MP17G02120',
		'e_value' => '3e-78',
		'bit_score' => '289',
		'alignment_length' => '938',
		'identity_percentage' => '31.56',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AT5G16280' => array(
		'gene_id' => 'AT5G16280',
		'e_value' => '5e-77',
		'bit_score' => '283',
		'alignment_length' => '1256',
		'identity_percentage' => '23.65',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'OS03G57300' => array(
		'gene_id' => 'OS03G57300',
		'e_value' => '1e-72',
		'bit_score' => '270',
		'alignment_length' => '1281',
		'identity_percentage' => '22.95',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'BPRRCC1105_09G00820' => array(
		'gene_id' => 'BPRRCC1105_09G00820',
		'e_value' => '1e-64',
		'bit_score' => '246',
		'alignment_length' => '831',
		'identity_percentage' => '28.28',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CV00G05540' => array(
		'gene_id' => 'CV00G05540',
		'e_value' => '8e-64',
		'bit_score' => '243',
		'alignment_length' => '1400',
		'identity_percentage' => '24.21',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CR01G05390' => array(
		'gene_id' => 'CR01G05390',
		'e_value' => '9e-63',
		'bit_score' => '240',
		'alignment_length' => '810',
		'identity_percentage' => '28.02',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'VC00G45660' => array(
		'gene_id' => 'VC00G45660',
		'e_value' => '6e-60',
		'bit_score' => '231',
		'alignment_length' => '900',
		'identity_percentage' => '26.00',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AC00G45200' => array(
		'gene_id' => 'AC00G45200',
		'e_value' => '1e-59',
		'bit_score' => '226',
		'alignment_length' => '873',
		'identity_percentage' => '27.49',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'phs344240' => array(
		'gene_id' => 'phs344240',
		'e_value' => '1e-40',
		'bit_score' => '168',
		'alignment_length' => '659',
		'identity_percentage' => '25.19',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ENSMUSG00000033382' => array(
		'gene_id' => 'ENSMUSG00000033382',
		'e_value' => '1e-39',
		'bit_score' => '165',
		'alignment_length' => '766',
		'identity_percentage' => '23.63',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CNC64A_003G00300' => array(
		'gene_id' => 'CNC64A_003G00300',
		'e_value' => '6e-38',
		'bit_score' => '158',
		'alignment_length' => '865',
		'identity_percentage' => '23.93',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ENSG00000153339' => array(
		'gene_id' => 'ENSG00000153339',
		'e_value' => '1e-37',
		'bit_score' => '158',
		'alignment_length' => '813',
		'identity_percentage' => '23.25',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'CNC64A_003G00260' => array(
		'gene_id' => 'CNC64A_003G00260',
		'e_value' => '1e-36',
		'bit_score' => '153',
		'alignment_length' => '717',
		'identity_percentage' => '25.10',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'FBgn0260655' => array(
		'gene_id' => 'FBgn0260655',
		'e_value' => '3e-36',
		'bit_score' => '154',
		'alignment_length' => '546',
		'identity_percentage' => '26.74',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PI00G14610' => array(
		'gene_id' => 'PI00G14610',
		'e_value' => '6e-35',
		'bit_score' => '149',
		'alignment_length' => '512',
		'identity_percentage' => '24.80',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'RCC4223.05g02320' => array(
		'gene_id' => 'RCC4223.05g02320',
		'e_value' => '9e-35',
		'bit_score' => '149',
		'alignment_length' => '587',
		'identity_percentage' => '23.68',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'Naga_100001g67' => array(
		'gene_id' => 'Naga_100001g67',
		'e_value' => '1e-27',
		'bit_score' => '126',
		'alignment_length' => '446',
		'identity_percentage' => '26.91',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'DDB_G0292682' => array(
		'gene_id' => 'DDB_G0292682',
		'e_value' => '6e-25',
		'bit_score' => '117',
		'alignment_length' => '752',
		'identity_percentage' => '21.68',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AP00G64240' => array(
		'gene_id' => 'AP00G64240',
		'e_value' => '4e-20',
		'bit_score' => '101',
		'alignment_length' => '377',
		'identity_percentage' => '25.99',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'PTI_21G02570' => array(
		'gene_id' => 'PTI_21G02570',
		'e_value' => '5e-19',
		'bit_score' => '98.2',
		'alignment_length' => '321',
		'identity_percentage' => '26.79',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'FC003G09000' => array(
		'gene_id' => 'FC003G09000',
		'e_value' => '5e-17',
		'bit_score' => '91.7',
		'alignment_length' => '326',
		'identity_percentage' => '25.15',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P038607'
		)
	),
	'WBGene00018512' => array(
		'gene_id' => 'WBGene00018512',
		'e_value' => '2e-13',
		'bit_score' => '79.7',
		'alignment_length' => '549',
		'identity_percentage' => '22.59',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'ES0205G00170' => array(
		'gene_id' => 'ES0205G00170',
		'e_value' => '2e-10',
		'bit_score' => '68.9',
		'alignment_length' => '265',
		'identity_percentage' => '24.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	),
	'pte467840' => array(
		'gene_id' => 'pte467840',
		'e_value' => '4e-08',
		'bit_score' => '62.4',
		'alignment_length' => '525',
		'identity_percentage' => '18.48',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P036772',
			'ORTHOFAM' => 'ORTHO03P046475'
		)
	),
	'CNC64A_094G00020' => array(
		'gene_id' => 'CNC64A_094G00020',
		'e_value' => '1e-07',
		'bit_score' => '59.3',
		'alignment_length' => '180',
		'identity_percentage' => '24.44',
		'gf' => array(
			'HOMFAM' => 'HOM03P002585',
			'ORTHOFAM' => 'ORTHO03P002556'
		)
	),
	'AA0024G00080' => array(
		'gene_id' => 'AA0024G00080',
		'e_value' => '7e-07',
		'bit_score' => '58.2',
		'alignment_length' => '112',
		'identity_percentage' => '32.14',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P034960',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	),
	'AA0026G00250' => array(
		'gene_id' => 'AA0026G00250',
		'e_value' => '9e-07',
		'bit_score' => '58.2',
		'alignment_length' => '112',
		'identity_percentage' => '32.14',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P034960',
			'ORTHOFAM' => 'ORTHO03P034674'
		)
	)
)
$similarity_hits_species = array(
	'ome' => array(
		(int) 0 => 'OM_18G01010'
	),
	'olu' => array(
		(int) 0 => 'OL17G01190'
	),
	'ota' => array(
		(int) 0 => 'OT_18G01170'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_17G01190'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_03G08000'
	),
	'ppa' => array(
		(int) 0 => 'PP00270G00460'
	),
	'atr' => array(
		(int) 0 => 'ATR_00030G00120'
	),
	'mpu' => array(
		(int) 0 => 'MP17G02120'
	),
	'ath' => array(
		(int) 0 => 'AT5G16280'
	),
	'osa' => array(
		(int) 0 => 'OS03G57300'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_09G00820'
	),
	'cvu' => array(
		(int) 0 => 'CV00G05540'
	),
	'cre' => array(
		(int) 0 => 'CR01G05390'
	),
	'vca' => array(
		(int) 0 => 'VC00G45660'
	),
	'acg' => array(
		(int) 0 => 'AC00G45200'
	),
	'phs' => array(
		(int) 0 => 'phs344240'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000033382'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_003G00300',
		(int) 1 => 'CNC64A_003G00260'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000153339'
	),
	'drm' => array(
		(int) 0 => 'FBgn0260655'
	),
	'pse3' => array(
		(int) 0 => 'PI00G14610'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.05g02320'
	),
	'nga' => array(
		(int) 0 => 'Naga_100001g67'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0292682'
	),
	'apr' => array(
		(int) 0 => 'AP00G64240'
	),
	'ptri' => array(
		(int) 0 => 'PTI_21G02570'
	),
	'fcy' => array(
		(int) 0 => 'FC003G09000'
	),
	'cel' => array(
		(int) 0 => 'WBGene00018512'
	),
	'esi' => array(
		(int) 0 => 'ES0205G00170'
	),
	'pte' => array(
		(int) 0 => 'pte467840'
	),
	'aan' => array(
		(int) 0 => 'AA0024G00080',
		(int) 1 => 'AA0026G00250'
	)
)
$gene_id = 'OM_18G01010'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'OM_18G01010'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OT_08G03260'
$gf_placeholder = 'HOM03P022148'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_094G00020',
	'e_value' => '1e-07',
	'bit_score' => '59.3',
	'alignment_length' => '180',
	'identity_percentage' => '24.44',
	'gf' => array(
		'HOMFAM' => 'HOM03P002585',
		'ORTHOFAM' => 'ORTHO03P002556'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_094G00020'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OM_18G01010	Ostreococcus mediterraneus	0.0	2803	1373	100.00
OL17G01190	Ostreococcus lucimarinus	0.0	1328	1362	53.23
OT_18G01170	Ostreococcus tauri	0.0	1248	1344	50.07
ORCC809_17G01190	Ostreococcus sp RCC809	0.0	1205	1406	49.57
MRCC299_03G08000	Micromonas sp RCC299	1e-101	360	1529	28.12
PP00270G00460	Physcomitrella patens	4e-82	300	1340	24.93
ATR_00030G00120	Amborella trichopoda	7e-80	293	940	24.89
MP17G02120	Micromonas pusilla strain CCMP1545	3e-78	289	938	31.56
AT5G16280	Arabidopsis thaliana	5e-77	283	1256	23.65
OS03G57300	Oryza sativa	1e-72	270	1281	22.95
BPRRCC1105_09G00820	Bathycoccus prasinos	1e-64	246	831	28.28
CV00G05540	Coccomyxa subellipsoidea C-169	8e-64	243	1400	24.21
CR01G05390	Chlamydomonas reinhardtii	9e-63	240	810	28.02
VC00G45660	Volvox carteri	6e-60	231	900	26.00
AC00G45200	Asterochloris sp. Cgr-DA1pho v2.0	1e-59	226	873	27.49
phs344240	Phytophtora sojae	1e-40	168	659	25.19
ENSMUSG00000033382	Mus musculus	1e-39	165	766	23.63
CNC64A_003G00300	Chlorella sp NC64A	6e-38	158	865	23.93
ENSG00000153339	Homo sapiens	1e-37	158	813	23.25
CNC64A_003G00260	Chlorella sp NC64A	1e-36	153	717	25.10
FBgn0260655	Drosophila melanogaster	3e-36	154	546	26.74
PI00G14610	Picochlorum sp. SENEW3 (SE3)	6e-35	149	512	24.80
RCC4223.05g02320	Picochlorum_RCC4223	9e-35	149	587	23.68
Naga_100001g67	Nannochloropsis gaditana	1e-27	126	446	26.91
DDB_G0292682	Dictyostelium discoideum	6e-25	117	752	21.68
AP00G64240	Auxenochlorella protothecoides	4e-20	101	377	25.99
PTI_21G02570	Phaeodactylum tricornutum	5e-19	98.2	321	26.79
FC003G09000	Fragilariopsis cylindrus	5e-17	91.7	326	25.15
WBGene00018512	Caenorhabditis elegans	2e-13	79.7	549	22.59
ES0205G00170	Ectocarpus siliculosus	2e-10	68.9	265	24.15
pte467840	Paramecium tetraurelia	4e-08	62.4	525	18.48
CNC64A_094G00020		1e-07	59.3	180	24.44
AA0024G00080	Aureococcus anophagefferens	7e-07	58.2	112	32.14
AA0026G00250	Aureococcus anophagefferens	9e-07	58.2	112	32.14

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment