Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OM_17G00960	Ostreococcus mediterraneus	0.0	1239	596	100.00
OT_17G00830	Ostreococcus tauri	0.0	775	529	69.75
OL16G00900	Ostreococcus lucimarinus	0.0	759	517	68.09
ORCC809_16G01780	Ostreococcus sp RCC809	0.0	668	578	57.79
MP16G01280	Micromonas pusilla strain CCMP1545	0.0	623	488	62.91
MRCC299_10G04230	Micromonas sp RCC299	0.0	618	486	60.49
BPRRCC1105_06G01240	Bathycoccus prasinos	0.0	592	520	54.42
AP00G21430	Auxenochlorella protothecoides	4e-158	474	497	49.09
CV00G12800	Coccomyxa subellipsoidea C-169	9e-157	469	498	45.98
PI00G51280	Picochlorum sp. SENEW3 (SE3)	6e-152	459	496	47.58
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	5e-151	453	498	43.98
RCC4223.04g03450	Picochlorum_RCC4223	3e-148	449	504	46.43
HE0000G41170	Helicosporidium sp.	3e-144	438	500	46.00
CV00G12810	Coccomyxa subellipsoidea C-169	8e-143	428	439	50.11
PP00065G00990	Physcomitrella patens	7e-128	394	522	38.12
CNC64A_025G01180	Chlorella sp NC64A	4e-127	395	501	43.71
PP00036G00370	Physcomitrella patens	8e-126	388	530	37.36
PP00373G00150	Physcomitrella patens	1e-123	387	434	43.55
ATR_00040G02570	Amborella trichopoda	1e-123	382	521	37.24
PP00036G01070	Physcomitrella patens	1e-123	382	521	36.47
PP00224G00220	Physcomitrella patens	1e-122	385	477	40.67
PP00162G00740	Physcomitrella patens	3e-122	384	366	48.36
AT5G22740	Arabidopsis thaliana	2e-120	374	518	38.42
PP00019G01110	Physcomitrella patens	2e-119	376	536	37.69
AT2G35650	Arabidopsis thaliana	4e-119	371	500	37.40
AT3G28180	Arabidopsis thaliana	8e-119	374	435	43.22
OS08G15420	Oryza sativa	2e-118	375	422	44.08
AT5G03760	Arabidopsis thaliana	2e-118	369	518	36.87
AT1G23480	Arabidopsis thaliana	8e-118	368	530	35.85
PP00089G01080	Physcomitrella patens	2e-117	371	540	37.22
ATR_00019G01680	Amborella trichopoda	4e-117	370	530	37.36
ATR_00065G00270	Amborella trichopoda	4e-117	371	469	40.30
OS03G56060	Oryza sativa	1e-116	362	452	42.04
AT4G07960	Arabidopsis thaliana	2e-116	369	524	39.69
OS06G42020	Oryza sativa	4e-116	362	516	36.43
AT1G24070	Arabidopsis thaliana	7e-116	363	572	34.27
AT3G07330	Arabidopsis thaliana	1e-115	366	529	37.05
OS09G25900	Oryza sativa	1e-115	367	395	45.06
AT4G31590	Arabidopsis thaliana	9e-115	364	421	42.04
OS07G03260	Oryza sativa	1e-114	363	431	42.69
OS07G43710	Oryza sativa	2e-114	360	518	37.64
PP00015G00680	Physcomitrella patens	2e-113	361	546	36.08
OS01G56130	Oryza sativa	8e-113	359	540	38.15
PP00164G00010	Physcomitrella patens	2e-112	358	546	36.81
OS05G43530	Oryza sativa	3e-112	358	545	39.27
AT2G24630	Arabidopsis thaliana	5e-112	357	519	37.76
AT4G13410	Arabidopsis thaliana	9e-112	352	506	36.17
AT3G56000	Arabidopsis thaliana	1e-111	351	521	35.89
ATR_00013G02120	Amborella trichopoda	2e-110	352	431	41.53
OS03G07350	Oryza sativa	2e-109	346	511	35.42
OS08G33740	Oryza sativa	1e-108	345	473	37.84
OS02G09930	Oryza sativa	2e-108	342	514	36.77
OS03G26044	Oryza sativa	5e-106	338	437	38.44
AT5G16190	Arabidopsis thaliana	2e-105	332	436	39.22
OS02G51060	Oryza sativa	4e-105	334	517	36.56
OS10G26630	Oryza sativa	4e-104	332	440	37.95
AT4G16590	Arabidopsis thaliana	8e-102	321	396	38.38
OS06G12460	Oryza sativa	8e-101	325	511	36.01
ATR_00072G01360	Amborella trichopoda	4e-92	293	313	44.41
CR06G04470	Chlamydomonas reinhardtii	1e-79	270	449	38.08
VC00G68920	Volvox carteri	3e-75	257	434	37.10
OS09G26770	Oryza sativa	7e-54	196	312	35.58
emh181270	Emiliania huxleyi	2e-41	157	245	38.78
emh488170	Emiliania huxleyi	2e-41	157	245	38.78
OM_13G00450	Ostreococcus mediterraneus	1e-21	103	268	29.10
ORCC809_20G02860	Ostreococcus sp RCC809	2e-20	99.8	242	28.10
OL20G02910	Ostreococcus lucimarinus	1e-19	97.4	244	29.10
OT_14G02980	Ostreococcus tauri	2e-15	84.0	255	26.27
Naga_100049g27	Nannochloropsis gaditana	8e-14	78.6	281	22.06
ES0097G00210	Ectocarpus siliculosus	2e-13	77.4	288	26.39
ES0097G00300	Ectocarpus siliculosus	1e-12	75.5	276	26.09
ES0200G00060	Ectocarpus siliculosus	4e-12	73.6	277	27.44
Naga_100079g22	Nannochloropsis gaditana	3e-11	70.5	319	21.94
emh647580	Emiliania huxleyi	2e-10	67.8	275	22.55
DDB_G0269124	Dictyostelium discoideum	3e-09	64.3	175	25.71
PI00G60790	Picochlorum sp. SENEW3 (SE3)	4e-09	63.9	334	20.66
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.3	223	22.42
PI00G46760	Picochlorum sp. SENEW3 (SE3)	3e-07	57.8	298	22.15
ES0185G00090	Ectocarpus siliculosus	4e-07	57.4	179	25.14
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	4e-07	57.4	260	23.85
CV00G83580	Coccomyxa subellipsoidea C-169	7e-07	56.6	155	28.39
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	1e-06	55.8	225	21.78
CV00G13860	Coccomyxa subellipsoidea C-169	2e-06	55.5	148	28.38
CV00G28250	Coccomyxa subellipsoidea C-169	2e-06	55.5	148	28.38
RCC4223.10g01020	Picochlorum_RCC4223	8e-06	53.1	297	21.89
CV00G01670	Coccomyxa subellipsoidea C-169	9e-06	53.1	380	21.05

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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