Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00019G01680	Amborella trichopoda	0.0	1420	691	100.00
AT4G31590	Arabidopsis thaliana	0.0	1083	696	77.59
AT2G24630	Arabidopsis thaliana	0.0	1073	693	75.47
PP00162G00740	Physcomitrella patens	0.0	964	703	67.85
OS08G15420	Oryza sativa	0.0	944	749	66.22
PP00019G01110	Physcomitrella patens	0.0	944	704	68.04
PP00373G00150	Physcomitrella patens	0.0	940	702	67.52
ATR_00065G00270	Amborella trichopoda	0.0	937	713	65.92
PP00224G00220	Physcomitrella patens	0.0	936	698	66.19
OS09G25900	Oryza sativa	0.0	934	687	71.03
AT3G28180	Arabidopsis thaliana	0.0	924	692	67.63
PP00015G00680	Physcomitrella patens	0.0	919	699	65.67
PP00089G01080	Physcomitrella patens	0.0	913	699	65.24
PP00164G00010	Physcomitrella patens	0.0	893	701	64.91
AT4G07960	Arabidopsis thaliana	0.0	875	710	64.23
AT3G07330	Arabidopsis thaliana	0.0	873	688	63.08
ATR_00013G02120	Amborella trichopoda	0.0	872	671	67.06
OS07G03260	Oryza sativa	0.0	856	689	64.73
OS05G43530	Oryza sativa	0.0	832	675	63.85
OS01G56130	Oryza sativa	0.0	822	689	63.28
OS03G56060	Oryza sativa	0.0	710	467	75.37
PP00036G00370	Physcomitrella patens	4e-144	438	537	41.90
PP00065G00990	Physcomitrella patens	3e-142	434	539	41.74
PP00036G01070	Physcomitrella patens	7e-142	433	537	41.53
ATR_00040G02570	Amborella trichopoda	1e-140	429	533	43.15
AT5G22740	Arabidopsis thaliana	4e-140	428	543	41.80
AT5G03760	Arabidopsis thaliana	1e-138	424	427	49.41
AT4G13410	Arabidopsis thaliana	2e-137	421	531	41.24
OS02G09930	Oryza sativa	1e-136	419	532	39.85
AT1G24070	Arabidopsis thaliana	4e-135	416	529	39.89
AT1G23480	Arabidopsis thaliana	7e-135	415	450	46.00
AT5G16190	Arabidopsis thaliana	8e-132	403	472	43.22
AT2G35650	Arabidopsis thaliana	8e-132	407	448	45.54
OS07G43710	Oryza sativa	1e-131	408	540	38.70
OS06G42020	Oryza sativa	6e-130	401	538	38.85
OS02G51060	Oryza sativa	1e-128	398	537	38.18
AT3G56000	Arabidopsis thaliana	4e-127	394	531	40.49
OS08G33740	Oryza sativa	2e-126	395	492	41.06
OS03G07350	Oryza sativa	1e-125	391	468	41.88
OS03G26044	Oryza sativa	2e-122	384	548	37.77
MP16G01280	Micromonas pusilla strain CCMP1545	4e-121	377	464	42.24
OM_17G00960	Ostreococcus mediterraneus	1e-119	377	531	37.85
MRCC299_10G04230	Micromonas sp RCC299	4e-118	369	510	38.63
OS10G26630	Oryza sativa	2e-117	369	373	46.92
BPRRCC1105_06G01240	Bathycoccus prasinos	2e-116	370	557	37.34
OT_17G00830	Ostreococcus tauri	8e-115	362	433	41.57
PI00G51280	Picochlorum sp. SENEW3 (SE3)	3e-112	359	421	40.14
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	9e-111	352	485	37.32
ATR_00072G01360	Amborella trichopoda	9e-110	342	309	52.10
RCC4223.04g03450	Picochlorum_RCC4223	1e-109	352	429	39.63
AP00G21430	Auxenochlorella protothecoides	2e-109	351	437	42.11
CV00G12800	Coccomyxa subellipsoidea C-169	2e-108	347	424	40.80
OL16G00900	Ostreococcus lucimarinus	5e-108	344	423	42.32
HE0000G41170	Helicosporidium sp.	7e-106	342	531	36.53
AT4G16590	Arabidopsis thaliana	3e-105	333	338	47.63
CV00G12810	Coccomyxa subellipsoidea C-169	8e-103	328	368	43.48
ORCC809_16G01780	Ostreococcus sp RCC809	2e-102	331	427	40.98
OS06G12460	Oryza sativa	1e-101	330	416	41.59
CNC64A_025G01180	Chlorella sp NC64A	2e-87	293	526	33.84
VC00G68920	Volvox carteri	7e-72	250	402	35.57
CR06G04470	Chlamydomonas reinhardtii	4e-70	246	377	38.46
OS09G26770	Oryza sativa	7e-59	212	379	35.09
ATR_00067G00360	Amborella trichopoda	2e-54	188	122	89.34
emh181270	Emiliania huxleyi	3e-45	169	266	38.35
emh488170	Emiliania huxleyi	3e-45	169	266	38.35
OT_14G02980	Ostreococcus tauri	2e-26	119	292	29.45
OM_13G00450	Ostreococcus mediterraneus	2e-26	119	313	28.12
ORCC809_20G02860	Ostreococcus sp RCC809	1e-23	110	250	28.40
OL20G02910	Ostreococcus lucimarinus	1e-22	107	342	26.61
ES0097G00300	Ectocarpus siliculosus	3e-20	100	293	30.72
ES0097G00210	Ectocarpus siliculosus	6e-20	99.4	318	29.56
Naga_100049g27	Nannochloropsis gaditana	6e-19	95.5	294	27.21
DDB_G0269124	Dictyostelium discoideum	7e-18	92.4	264	28.79
OS11G13650	Oryza sativa	9e-18	87.8	246	32.52
Naga_100079g22	Nannochloropsis gaditana	5e-17	89.0	335	25.37
ES0200G00060	Ectocarpus siliculosus	2e-14	81.3	237	29.11
PP00372G00370	Physcomitrella patens	1e-13	78.6	247	26.32
ES0185G00090	Ectocarpus siliculosus	4e-13	77.0	358	25.42
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	5e-12	73.2	278	28.42
ES0097G00120	Ectocarpus siliculosus	6e-12	72.8	220	32.73
emh647580	Emiliania huxleyi	3e-11	70.9	249	26.10
PI00G60790	Picochlorum sp. SENEW3 (SE3)	4e-10	67.4	269	23.42
CV00G83580	Coccomyxa subellipsoidea C-169	2e-09	65.1	262	27.48
OS10G25740	Oryza sativa	3e-09	60.8	78	42.31
PI00G46760	Picochlorum sp. SENEW3 (SE3)	3e-09	64.7	215	23.72
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	1e-08	62.8	248	25.40
RCC4223.10g01020	Picochlorum_RCC4223	1e-08	62.8	215	24.65
CV00G28250	Coccomyxa subellipsoidea C-169	2e-08	62.0	245	26.12
ccr65060	Chondrus crispus	3e-08	61.2	288	23.26
CV00G13860	Coccomyxa subellipsoidea C-169	5e-08	60.5	245	25.71
AP00G07320	Auxenochlorella protothecoides	1e-07	59.3	283	23.67
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	2e-07	58.5	242	25.62
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	3e-07	58.2	277	26.35
PP00168G00010	Physcomitrella patens	3e-07	53.1	55	47.27
CV00G40830	Coccomyxa subellipsoidea C-169	5e-07	57.0	301	21.93
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	7e-07	57.0	245	24.49

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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