Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G28180	Arabidopsis thaliana	0.0	1374	674	100.00
ATR_00019G01680	Amborella trichopoda	0.0	924	692	67.63
AT4G31590	Arabidopsis thaliana	0.0	905	686	66.62
AT2G24630	Arabidopsis thaliana	0.0	899	691	66.43
OS08G15420	Oryza sativa	0.0	865	728	62.36
PP00162G00740	Physcomitrella patens	0.0	853	684	64.47
ATR_00065G00270	Amborella trichopoda	0.0	838	711	63.15
OS09G25900	Oryza sativa	0.0	834	691	63.97
PP00019G01110	Physcomitrella patens	0.0	832	689	63.86
PP00373G00150	Physcomitrella patens	0.0	825	690	62.46
AT3G07330	Arabidopsis thaliana	0.0	822	678	61.06
AT4G07960	Arabidopsis thaliana	0.0	823	697	62.55
ATR_00013G02120	Amborella trichopoda	0.0	817	678	63.86
OS07G03260	Oryza sativa	0.0	817	692	62.28
PP00224G00220	Physcomitrella patens	0.0	811	690	60.72
PP00015G00680	Physcomitrella patens	0.0	808	686	61.22
PP00089G01080	Physcomitrella patens	0.0	800	695	60.43
OS05G43530	Oryza sativa	0.0	796	683	61.35
OS01G56130	Oryza sativa	0.0	790	666	63.06
PP00164G00010	Physcomitrella patens	0.0	787	694	60.81
OS03G56060	Oryza sativa	0.0	726	475	75.37
PP00036G00370	Physcomitrella patens	1e-146	444	541	42.51
PP00036G01070	Physcomitrella patens	2e-145	441	541	42.88
PP00065G00990	Physcomitrella patens	2e-144	439	541	42.33
OS02G09930	Oryza sativa	4e-142	432	434	48.16
AT5G22740	Arabidopsis thaliana	8e-142	432	549	41.71
ATR_00040G02570	Amborella trichopoda	1e-141	431	543	42.54
AT5G03760	Arabidopsis thaliana	5e-138	422	537	42.27
AT4G13410	Arabidopsis thaliana	6e-137	419	541	39.37
OS06G42020	Oryza sativa	4e-136	417	462	44.81
AT1G23480	Arabidopsis thaliana	1e-135	417	452	46.02
AT2G35650	Arabidopsis thaliana	2e-132	409	438	45.66
AT1G24070	Arabidopsis thaliana	2e-132	408	542	39.30
AT5G16190	Arabidopsis thaliana	9e-131	400	484	42.36
OS03G07350	Oryza sativa	3e-130	402	478	41.21
OS08G33740	Oryza sativa	7e-130	403	506	41.50
OS07G43710	Oryza sativa	2e-127	396	553	38.34
OS02G51060	Oryza sativa	3e-127	394	557	38.42
AT3G56000	Arabidopsis thaliana	5e-125	389	434	45.16
OS10G26630	Oryza sativa	6e-123	383	373	48.53
OS03G26044	Oryza sativa	3e-120	377	555	38.38
OM_17G00960	Ostreococcus mediterraneus	7e-120	377	545	38.72
MP16G01280	Micromonas pusilla strain CCMP1545	2e-119	372	495	38.59
MRCC299_10G04230	Micromonas sp RCC299	9e-119	370	491	40.33
OT_17G00830	Ostreococcus tauri	1e-118	372	427	42.62
PI00G51280	Picochlorum sp. SENEW3 (SE3)	5e-113	360	426	41.55
RCC4223.04g03450	Picochlorum_RCC4223	5e-112	358	434	41.47
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	4e-111	352	546	36.63
CV00G12800	Coccomyxa subellipsoidea C-169	3e-110	351	376	44.95
ATR_00072G01360	Amborella trichopoda	5e-110	342	309	51.78
AP00G21430	Auxenochlorella protothecoides	8e-110	352	426	41.55
HE0000G41170	Helicosporidium sp.	7e-109	349	433	40.18
AT4G16590	Arabidopsis thaliana	3e-108	340	433	40.18
BPRRCC1105_06G01240	Bathycoccus prasinos	8e-108	347	365	45.21
OL16G00900	Ostreococcus lucimarinus	7e-107	340	409	42.54
OS06G12460	Oryza sativa	6e-106	341	429	42.19
CV00G12810	Coccomyxa subellipsoidea C-169	9e-106	335	368	44.84
ORCC809_16G01780	Ostreococcus sp RCC809	1e-100	326	535	36.07
CNC64A_025G01180	Chlorella sp NC64A	3e-86	290	426	36.85
VC00G68920	Volvox carteri	8e-69	241	398	36.68
CR06G04470	Chlamydomonas reinhardtii	8e-67	237	403	36.48
OS09G26770	Oryza sativa	8e-59	211	319	36.68
emh181270	Emiliania huxleyi	1e-49	181	292	39.38
emh488170	Emiliania huxleyi	1e-49	181	292	39.38
OM_13G00450	Ostreococcus mediterraneus	2e-28	125	385	29.09
ATR_00067G00360	Amborella trichopoda	8e-27	111	139	56.83
OT_14G02980	Ostreococcus tauri	2e-25	116	298	27.85
OL20G02910	Ostreococcus lucimarinus	1e-24	114	245	31.02
ORCC809_20G02860	Ostreococcus sp RCC809	1e-24	113	245	30.61
ES0097G00300	Ectocarpus siliculosus	8e-18	92.4	340	28.24
DDB_G0269124	Dictyostelium discoideum	2e-17	90.9	250	30.80
ES0097G00210	Ectocarpus siliculosus	3e-17	90.5	310	29.03
Naga_100049g27	Nannochloropsis gaditana	7e-17	88.6	325	24.92
Naga_100079g22	Nannochloropsis gaditana	5e-15	82.8	328	25.30
ES0200G00060	Ectocarpus siliculosus	4e-14	80.1	238	30.25
PP00372G00370	Physcomitrella patens	6e-14	79.3	255	27.84
emh647580	Emiliania huxleyi	1e-12	75.5	251	28.69
PI00G60790	Picochlorum sp. SENEW3 (SE3)	1e-12	75.9	311	25.08
PI00G46760	Picochlorum sp. SENEW3 (SE3)	2e-12	75.1	287	25.44
OS11G13650	Oryza sativa	2e-12	71.6	134	34.33
RCC4223.10g01020	Picochlorum_RCC4223	8e-12	73.2	269	25.65
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	5e-11	70.1	271	26.57
AP00G07320	Auxenochlorella protothecoides	5e-11	70.5	243	25.93
CV00G83580	Coccomyxa subellipsoidea C-169	2e-10	68.6	277	28.16
CV00G28250	Coccomyxa subellipsoidea C-169	3e-10	68.2	250	26.80
CV00G13860	Coccomyxa subellipsoidea C-169	3e-10	67.8	250	27.20
ES0185G00090	Ectocarpus siliculosus	4e-10	67.4	361	25.76
CV00G01670	Coccomyxa subellipsoidea C-169	1e-09	65.9	239	25.94
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	2e-09	64.7	209	27.27
RCC4223.10g00870	Picochlorum_RCC4223	2e-09	65.1	343	23.62
ccr13740	Chondrus crispus	5e-09	63.5	260	25.77
ES0097G00120	Ectocarpus siliculosus	6e-09	63.2	217	29.03
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	3e-08	61.6	170	29.41
PI00G34600	Picochlorum sp. SENEW3 (SE3)	3e-08	61.2	288	25.00
ccr65060	Chondrus crispus	4e-08	60.8	281	24.56
emh729890	Emiliania huxleyi	4e-07	57.0	210	28.10
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	6e-07	57.0	196	27.55
CV00G40830	Coccomyxa subellipsoidea C-169	1e-06	55.8	225	24.44
AC00G95180	Asterochloris sp. Cgr-DA1pho v2.0	5e-06	53.9	157	25.48

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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