Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G24630	Arabidopsis thaliana	0.0	1419	691	100.00
AT4G31590	Arabidopsis thaliana	0.0	1239	694	87.32
ATR_00019G01680	Amborella trichopoda	0.0	1073	693	75.47
ATR_00065G00270	Amborella trichopoda	0.0	950	716	67.60
OS08G15420	Oryza sativa	0.0	946	737	66.62
PP00162G00740	Physcomitrella patens	0.0	933	702	65.67
PP00373G00150	Physcomitrella patens	0.0	912	702	65.53
PP00019G01110	Physcomitrella patens	0.0	910	702	64.96
PP00224G00220	Physcomitrella patens	0.0	907	699	64.23
PP00089G01080	Physcomitrella patens	0.0	906	700	64.14
AT3G28180	Arabidopsis thaliana	0.0	900	691	66.43
OS09G25900	Oryza sativa	0.0	897	687	68.70
PP00015G00680	Physcomitrella patens	0.0	888	704	63.49
AT4G07960	Arabidopsis thaliana	0.0	881	717	64.16
PP00164G00010	Physcomitrella patens	0.0	865	704	62.78
ATR_00013G02120	Amborella trichopoda	0.0	855	670	65.07
AT3G07330	Arabidopsis thaliana	0.0	851	688	61.19
OS05G43530	Oryza sativa	0.0	848	676	65.09
OS07G03260	Oryza sativa	0.0	837	684	63.60
OS01G56130	Oryza sativa	0.0	826	691	63.68
OS03G56060	Oryza sativa	0.0	716	464	75.86
PP00065G00990	Physcomitrella patens	3e-148	449	535	43.18
PP00036G01070	Physcomitrella patens	1e-146	445	535	42.80
PP00036G00370	Physcomitrella patens	6e-145	441	535	42.24
AT5G03760	Arabidopsis thaliana	6e-142	433	527	43.07
ATR_00040G02570	Amborella trichopoda	1e-140	429	530	42.45
OS02G09930	Oryza sativa	3e-140	428	531	41.43
AT5G22740	Arabidopsis thaliana	2e-137	421	557	39.14
AT4G13410	Arabidopsis thaliana	5e-137	420	529	40.45
AT1G23480	Arabidopsis thaliana	4e-136	419	440	46.14
AT1G24070	Arabidopsis thaliana	1e-134	414	526	40.49
AT2G35650	Arabidopsis thaliana	6e-134	413	438	45.89
OS06G42020	Oryza sativa	8e-134	411	540	39.26
AT5G16190	Arabidopsis thaliana	2e-130	400	471	43.31
OS07G43710	Oryza sativa	3e-130	404	535	40.19
OS08G33740	Oryza sativa	2e-129	402	496	41.13
OS02G51060	Oryza sativa	1e-128	398	537	38.73
OS03G07350	Oryza sativa	6e-128	397	465	40.86
AT3G56000	Arabidopsis thaliana	1e-126	393	434	45.85
OS03G26044	Oryza sativa	5e-122	382	546	39.19
OS10G26630	Oryza sativa	1e-120	377	373	46.38
MRCC299_10G04230	Micromonas sp RCC299	2e-119	373	463	42.12
MP16G01280	Micromonas pusilla strain CCMP1545	3e-117	367	462	39.39
OM_17G00960	Ostreococcus mediterraneus	1e-114	364	519	37.76
BPRRCC1105_06G01240	Bathycoccus prasinos	1e-113	362	546	36.63
OT_17G00830	Ostreococcus tauri	3e-113	358	429	41.26
PI00G51280	Picochlorum sp. SENEW3 (SE3)	4e-113	361	517	35.01
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	5e-113	358	536	36.38
AP00G21430	Auxenochlorella protothecoides	4e-111	356	421	40.38
CV00G12800	Coccomyxa subellipsoidea C-169	6e-111	353	519	35.84
CV00G12810	Coccomyxa subellipsoidea C-169	1e-110	348	464	40.95
RCC4223.04g03450	Picochlorum_RCC4223	1e-110	355	518	34.56
OS06G12460	Oryza sativa	2e-109	351	522	38.70
HE0000G41170	Helicosporidium sp.	2e-108	348	433	39.95
ATR_00072G01360	Amborella trichopoda	9e-107	334	309	50.16
AT4G16590	Arabidopsis thaliana	2e-105	333	422	40.05
OL16G00900	Ostreococcus lucimarinus	7e-103	330	430	38.60
ORCC809_16G01780	Ostreococcus sp RCC809	5e-99	322	426	38.50
CNC64A_025G01180	Chlorella sp NC64A	9e-90	300	524	33.40
CR06G04470	Chlamydomonas reinhardtii	6e-71	249	372	38.71
VC00G68920	Volvox carteri	2e-70	246	367	37.33
OS09G26770	Oryza sativa	4e-58	210	317	36.59
emh181270	Emiliania huxleyi	3e-48	178	266	39.85
emh488170	Emiliania huxleyi	3e-48	178	266	39.85
ATR_00067G00360	Amborella trichopoda	2e-35	135	122	67.21
OM_13G00450	Ostreococcus mediterraneus	5e-28	124	248	31.05
OT_14G02980	Ostreococcus tauri	1e-27	122	300	29.00
ORCC809_20G02860	Ostreococcus sp RCC809	1e-25	117	245	30.20
OL20G02910	Ostreococcus lucimarinus	3e-25	115	248	31.05
ES0097G00210	Ectocarpus siliculosus	3e-20	99.8	304	30.92
ES0097G00300	Ectocarpus siliculosus	5e-20	99.4	333	29.43
Naga_100079g22	Nannochloropsis gaditana	4e-18	92.8	332	27.11
OS11G13650	Oryza sativa	9e-18	87.8	248	33.06
Naga_100049g27	Nannochloropsis gaditana	3e-17	89.7	294	26.53
DDB_G0269124	Dictyostelium discoideum	8e-17	89.0	264	29.17
ES0200G00060	Ectocarpus siliculosus	7e-14	79.3	241	29.46
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	2e-13	77.8	316	27.53
ES0185G00090	Ectocarpus siliculosus	6e-13	76.6	359	26.18
PP00372G00370	Physcomitrella patens	1e-12	75.1	255	27.06
ES0097G00120	Ectocarpus siliculosus	2e-12	74.7	220	33.18
PI00G46760	Picochlorum sp. SENEW3 (SE3)	7e-12	73.2	267	25.84
RCC4223.10g01020	Picochlorum_RCC4223	3e-11	71.2	267	25.84
emh647580	Emiliania huxleyi	6e-11	69.7	249	26.91
CV00G28250	Coccomyxa subellipsoidea C-169	1e-09	65.9	250	27.20
CV00G13860	Coccomyxa subellipsoidea C-169	2e-09	65.1	250	28.00
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	2e-09	64.7	197	27.41
CV00G83580	Coccomyxa subellipsoidea C-169	8e-09	63.2	185	29.73
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	1e-08	62.4	209	26.79
OS10G25740	Oryza sativa	1e-08	58.9	83	39.76
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	1e-08	62.4	258	25.97
ccr65060	Chondrus crispus	2e-08	62.0	301	23.26
AP00G07320	Auxenochlorella protothecoides	2e-08	61.6	246	23.98
CV00G40830	Coccomyxa subellipsoidea C-169	2e-08	61.6	409	22.98
ccr13740	Chondrus crispus	5e-08	60.5	350	24.29
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.3	245	26.12
RCC4223.10g00870	Picochlorum_RCC4223	2e-07	58.5	246	23.58
CV00G01670	Coccomyxa subellipsoidea C-169	7e-07	57.0	171	26.32
PP00168G00010	Physcomitrella patens	9e-07	52.0	55	43.64
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	3e-06	55.1	174	24.71

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment