Functional clusters

Information

  • Type Gene Ontology
  • Description non-membrane-bounded organelle

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_428 9 18 0.0000472014
Arabidopsis thaliana Chr2 4 CH_ath_428 9 18 0.0000472014

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 12
GO:0000312 plastid small ribosomal subunit 6
GO:0000313 organellar ribosome 6
GO:0000781 chromosome, telomeric region 2
GO:0000785 chromatin 16
GO:0000786 nucleosome 168
GO:0000792 heterochromatin 2
GO:0000795 synaptonemal complex 2
GO:0000796 condensin complex 24
GO:0000802 transverse filament 4
GO:0000808 origin recognition complex 2
GO:0000811 GINS complex 2
GO:0000922 spindle pole 6
GO:0000923 equatorial microtubule organizing center 2
GO:0000931 gamma-tubulin large complex 8
GO:0000940 outer kinetochore 12
GO:0001534 radial spoke 4
GO:0005655 nucleolar ribonuclease P complex 10
GO:0005662 DNA replication factor A complex 2
GO:0005664 nuclear origin of replication recognition complex 6
GO:0005712 chiasma 2
GO:0005721 pericentric heterochromatin 8
GO:0005730 nucleolus 12
GO:0005736 RNA polymerase I complex 2
GO:0005762 mitochondrial large ribosomal subunit 2
GO:0005763 mitochondrial small ribosomal subunit 6
GO:0005813 centrosome 2
GO:0005840 ribosome 32
GO:0005856 cytoskeleton 2
GO:0005872 minus-end kinesin complex 2
GO:0005874 microtubule 6
GO:0005880 nuclear microtubule 6
GO:0005885 Arp2/3 protein complex 2
GO:0005930 axoneme 2
GO:0008278 cohesin complex 8
GO:0008290 F-actin capping protein complex 12
GO:0008622 epsilon DNA polymerase complex 30
GO:0009508 plastid chromosome 4
GO:0009547 plastid ribosome 80
GO:0010369 chromocenter 8
GO:0010494 cytoplasmic stress granule 4
GO:0012511 monolayer-surrounded lipid storage body 4
GO:0015934 large ribosomal subunit 16
GO:0016459 myosin complex 10
GO:0016514 SWI/SNF complex 4
GO:0016587 Isw1 complex 4
GO:0022625 cytosolic large ribosomal subunit 4
GO:0022626 cytosolic ribosome 2
GO:0022627 cytosolic small ribosomal subunit 4
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 2
GO:0030915 Smc5-Smc6 complex 10
GO:0030981 cortical microtubule cytoskeleton 2
GO:0031011 Ino80 complex 2
GO:0031213 RSF complex 12
GO:0031262 Ndc80 complex 4
GO:0031390 Ctf18 RFC-like complex 4
GO:0031422 RecQ family helicase-topoisomerase III complex 14
GO:0031469 polyhedral organelle 2
GO:0034457 Mpp10 complex 12
GO:0035060 brahma complex 2
GO:0035101 FACT complex 26
GO:0042644 chloroplast nucleoid 4
GO:0042729 DASH complex 2
GO:0042788 polysomal ribosome 2
GO:0043232 intracellular non-membrane-bounded organelle 10
GO:0043253 chloroplast ribosome 2
GO:0043625 delta DNA polymerase complex 4
GO:0044391 ribosomal subunit 6
GO:0045298 tubulin complex 2
GO:0070209 ASTRA complex 2
GO:0070545 PeBoW complex 2
GO:0070652 HAUS complex 4
GO:0072686 mitotic spindle 6
GO:0097427 microtubule bundle 4
GO:0098687 chromosomal region 2
GO:0099086 synaptonemal structure 4
GO:0099513 polymeric cytoskeletal fiber 2
GO:1903754 cortical microtubule plus-end 4
GO:1990023 mitotic spindle midzone 4
GO:1990718 axonemal central pair projection 2
GO:1990879 CST complex 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001